HsaINT1047454 @ hg38
Intron Retention
Gene
ENSG00000196724 | ZNF418
Description
zinc finger protein 418 [Source:HGNC Symbol;Acc:HGNC:20647]
Coordinates
chr19:57930428-57933902:-
Coord C1 exon
chr19:57933817-57933902
Coord A exon
chr19:57930555-57933816
Coord C2 exon
chr19:57930428-57930554
Length
3262 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
ATCTGTCACCATCATAGCAGGGC
3' ss Score
3.52
Exon sequences
Seq C1 exon
GCATCATCTGGCTGCAAAGAAGAGAACACACTGTGTTTGAGGGAGGAGGAAGGAGGATCAGAGTTTAAACTCCTGCCATAATGCAG
Seq A exon
GTGAGGGTTACTGGACCATATTAATGAGTAAGGAGCTGTGGCTGGATTCAAGATTCACAGTTTGTAAAATGGCAACTAGATTTTCCTTTTTTTTTTGAGCGGGAGTCTCGCTCTATCGCCCAGGCTGGAGTGCAGTGGCACGATCTTGGCTCATTGCAAGCTCTGCCTCCCGGGTTCACGCCATTCTCCTGCCTCAACCTCCCGAGTAGCTGGGACTACAGGCGCCCGTCACCATGCTCAGCTAATTTTTTGGATTTTTTAGTAGAGACGGTTTCACTGTGTTAGCCAGGATAGTCTCAATCTCCTGACCTCGTGATCCATCGGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACCAAGCCCGGCCATGCCCGGCTAATTTTTAATATTTTTAGTAGAGATGGGGTTTCACCGTGTTAGCCAGATGGTCTTGATCTCCTGACCTCGTGATCTACCCGTCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCAAGCCCGGTCGGTAACTAGATTTTCTAATAGACTGTGAGGGCATGAAAGGGGAATCAGGTATGACCACCAGGTTTTTGGTCTTAGCATCTGCAGTGATGGAAGCTGCATCAACTGAGATGAGCACATAGTAGGTATAATATTCATTGGGGATGTGAAGAATGTTGTTTTGACCATGTTAAGAGTCTGAGATAGTTTAGCCTCCATTATGACATTGACACACTTCAAATTTTCATGGTAAATCTTTTGTGGGGGCCAGGAAGGGGTGGTTGCAGGCTGAGGGCTGAATTTCTTGCTTGGGTCCCTGGCTGACATTGCCACAGGAGAAGGAGGCAAGGGCTCATGAAGATAGGGTATGTCAGACAACATGGTTTGTCAGGGGGCATAGGCTTTCCAAGGGTAGAATAGATAAGAGATGTAAGCAGAAGCATAGAAATAATTGAAGGAAGATGACACTTGGGCCAAGGCTGGTACTTATTCACCACTCTGTGGACTCACCAAGATTTTGAGAAAACTTTGTTGGTGCTTGGGGGTTTTCATTCGGCCTGGTGGATACATGCTCAGGGTAAATTTGGTTATCTGTGACAGACATTGGGCCTGGGGTGGACAGCTGATGGGCTGGGATTTTATTTATTTTTTTCTTTTGTTTTCCACTTTTCTTAGACCATTCTCCATAACAAGGGAGTGGGATTTAAATGACTCTAGGTGGACAGAGGAAAGTCGTCATTGTAGAGGGGTCACCAAGTGCAACACAGAAGTGGAATAGGGCCATGGATATCTAAAGCCCCACCTGGTTCTGTGGGGATGTGGAGCCATGCAAGAAGGCCTTCATAGAATGACTTGGGACTGCATTGCTATTGGGAGCCATGAGAATTCTGTGGTAATATTGGATCCTGTTTGAATTTGCCAAGCATACTCTGAATTCTGTCAGCCACATTGTGGCATAAGGCCGAAAATGAAAGGCCAATGTGATGTGCAACGTTGGTGTGTGGTGATACTGTATGACCTCAAATGGCCTGAGCACAAATCCCCTTCCCACTCTGTTCTATTGGATAATGTATCCTGGCCTAACAACCCTTTTCATTAAGGGATCAGGCACAGTTTCTGGTTATTATACTTTGTACTGGGTTTCAATTCCATTTCTACTCAGAATTATTTAAGCAAGTCAGTGGCACCCTCCTGAGAAATCAGGGGCTATCACACCCTCTTCATCCTACAAAGTGTGCATAACACTGTCCCTGGTTTCCATTTGTTGTCCACAGTGCAACCCCCATGTGGCCCTCTCTGCCAGGCTGTGAGTTATTTGATTTTGAAATTGCTGTGGATGGCATATGTACAGTCTCAGGTGTCAATTGTTTCCCCAACACTATAACCCTAAGGGGAGAATCCCACTCAGAGCAGTAGAAGGAAAAGAAGGGGATTAAAATACTTTGTTGGCCAGGCTTGAAGGCTCATGCTGTAATCCCAGCACTTTGGGAGGCTGAGGTGGGAGGATTGCTTGAGGCCAGGAGTTTGAGATCAGCCTGGGCAACTTAGCAACACCCCATCTCTTAAAAGAAAGTGGTTGATGTTGCACATACGTAAGATCCCATCTCCACAGAAGGCTGAGGCCTGGGGCTAAGGGGTTTGAACTTTCCATGAGCCATGATCACACTACTCCCCTCCAGCTTAGGCGACCAAAGGAGAACCTGACTAAAAGAAACCAAAACTGTAATTTGTGTTAAGGCTCAAAAGAAGCTGATGGTTGGGGGATGTCATGTTGGGCTGGCCGTGACATGTGCCTGTGCTATCTAAAGAATGATGTGTAAGGCCGGGCGTGGTGGCTTATGCCTATAATCCCAGCACTATGGGAGGCCGAGGTGGGTGGATCACCTGAGATCAGGAGTTTGAGACCAGCCTAGCCAACATGGTGAAACCCCATTTCTACTAAAAATACAAAAATTAGCCAGGTGTGGTGGTGGGTGCCTGTAATCCCAGTTACTTGGGAGGCTGAGGCAGGAAAATTGCTTGAACCTGGGAGGTGGAGGTTGCAGTGAGCTGAGATCCCGCCACCGCACTCTTGTCTGGGCAACAAGAGCGAAACTCCATCTCAGAAAAAAAAGAAGGATGTGTATTTAGAGAGGGAGTACGTCTAATGGACCCAGGCAACTGCACTGGGCTTTATGTGAGCTCGGATATACCACAGGCATTAGCTGTCAGGAGGGGGTGGACCCTTTTATGTTAAGAGTACAGCATAGCCGGGCACGGTGGCTCACGCCTATAATCCCAACACTTTGGGAGGCTGAGGCGGGTGGATCACGAGGTCAGGAGTTCAAGACCAGCCTGGCCAAGATGGTGAAACCCTGTCTCTACTAAAAATACAAAAATGAGCCAGAAGTGGTGGTGGGTGCCTGTAATCCCAGCTACTCGGGCGGCTGAGGCAGAGAATTGCTTGAACCCAGGAGGCAGAGGTTGCAGTGAGCTGAGGTCATGCCACTGCACTCCAGCCTGGGTGACAGAGCGAGACTCTGTCTCAGAAAAACAAAAAAACAAGCACAGCATAGATCCCTATTTTTCCCCTACTTCTTAATTGCTGATGGCTATACTGAGTGACCAGTGGGCCCACGAAGAGACAAAGGCACCAGTGGACTAGTTTCTCCTCTGTGCTGAGGATCTTGGGAGGAGGATGGGCAAGGGGGTGGGGGTGTGGGAGAGGTGGATTGTGGTACCTCAGCATAGGAGCTGTTTGTGGTTTCATCTGTCACCATCATAGCAG
Seq C2 exon
GGCACTGTGGCATTTGAAGATGTGGCTGTGAACTTTTCCCAGGAGGAGTGGAGTCTCCTTAGTGAGGTTCAGAGATGCCTTTACCATGACGTGATGCTGGAGAACTGGGTACTTATATCCTCCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196724:ENST00000396147:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains