HsaALTA1053471-2/3 @ hg38
Alternative 3'ss
Gene
ENSG00000196724 | ZNF418
Description
zinc finger protein 418 [Source:HGNC Symbol;Acc:HGNC:20647]
Coordinates
chr19:57930428-57933963:-
Coord C1 exon
chr19:57933817-57933963
Coord A exon
chr19:57930513-57930554
Coord C2 exon
chr19:57930428-57930512
Length
42 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
ATCTGTCACCATCATAGCAGGGC
3' ss Score
3.52
Exon sequences
Seq C1 exon
TCGGTGGGGAGGCAAGAGGGCGGCGAGGAGGTGATGTTACCACAGTCCCATTTGTCTGCAGGCATCATCTGGCTGCAAAGAAGAGAACACACTGTGTTTGAGGGAGGAGGAAGGAGGATCAGAGTTTAAACTCCTGCCATAATGCAG
Seq A exon
GGCACTGTGGCATTTGAAGATGTGGCTGTGAACTTTTCCCAG
Seq C2 exon
GAGGAGTGGAGTCTCCTTAGTGAGGTTCAGAGATGCCTTTACCATGACGTGATGCTGGAGAACTGGGTACTTATATCCTCCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196724-9-10,9-9,9-8-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=FE(90.3=100)
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCATCATCTGGCTGCAAAGA
R:
TCTCCAGCATCACGTCATGGT
Band lengths:
148-190
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains