HsaEX0073621 @ hg38
Exon Skipping
Gene
ENSG00000196724 | ZNF418
Description
zinc finger protein 418 [Source:HGNC Symbol;Acc:HGNC:20647]
Coordinates
chr19:57930428-57935372:-
Coord C1 exon
chr19:57935161-57935372
Coord A exon
chr19:57933817-57933902
Coord C2 exon
chr19:57930428-57930554
Length
86 bp
Sequences
Splice sites
3' ss Seq
ACAGTCCCATTTGTCTGCAGGCA
3' ss Score
8.75
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
TTTTGGTTAATGTTGGGTGTGTTTCTGCGGTTTGTGAGGTGAGAGGCGCTGGAGCTATGGGTCCGAACCGCGGTGTCTGAACCCAGAAGGTGAAGAGTCCTTCTTGCTGCACAGAGGCAGATCTTAGGCCCCGTAACGGCGCCCGCCGCTCCCGGCAGTGCTTTCCCCGCGTACTCGGGATGGCGGCGGCCGCGCTGAGGCTCCCGGCTCAG
Seq A exon
GCATCATCTGGCTGCAAAGAAGAGAACACACTGTGTTTGAGGGAGGAGGAAGGAGGATCAGAGTTTAAACTCCTGCCATAATGCAG
Seq C2 exon
GGCACTGTGGCATTTGAAGATGTGGCTGTGAACTTTTCCCAGGAGGAGTGGAGTCTCCTTAGTGAGGTTCAGAGATGCCTTTACCATGACGTGATGCTGGAGAACTGGGTACTTATATCCTCCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196724-'2-9,'2-5,9-9
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCTTCTTGCTGCACAGAGG
R:
GACTCCACTCCTCCTGGGAAA
Band lengths:
171-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development