HsaEX0073633 @ hg38
Exon Skipping
Gene
ENSG00000130818 | ZNF426
Description
zinc finger protein 426 [Source:HGNC Symbol;Acc:HGNC:20725]
Coordinates
chr19:9530985-9533966:-
Coord C1 exon
chr19:9533840-9533966
Coord A exon
chr19:9532845-9532925
Coord C2 exon
chr19:9530985-9531067
Length
81 bp
Sequences
Splice sites
3' ss Seq
ATGTATTTCTCTGTGCTCAGGAG
3' ss Score
7.92
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GATTCAGTGACCTTTGACGATGTGGCTGTGGACTTCACCCAGGAGGAGTGGACTTTACTGGACTCAACTCAGAGAAGCCTCTACAGTGACGTGATGCTGGAGAACTACAAGAACCTGGCCACAGTAG
Seq A exon
GAGGTCAGATCATCAAACCCAGTCTAATCTCTTGGTTGGAACAAGAAGAGTCAAGGACAGTTCAGGGAGGAGTTCTCCAAG
Seq C2 exon
GATGGGAAATGCGACTTGAAACCCAGTGGTCTATACTTCAGCAGGACTTTTTGAGGGGTCAGACATCCATTGGGATACAATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000130818_MULTIEX1-5/6=4-6
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.007 C2=0.000
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCTTTGACGATGTGGCTGT
R:
ACCCCTCAAAAAGTCCTGCTG
Band lengths:
178-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development