RnoEX0101385 @ rn6
Exon Skipping
Gene
ENSRNOG00000033624 | Zfp426
Description
zinc finger protein 426 [Source:RGD Symbol;Acc:1590942]
Coordinates
chr8:21480219-21489382:-
Coord C1 exon
chr8:21489256-21489382
Coord A exon
chr8:21481642-21481722
Coord C2 exon
chr8:21480219-21480301
Length
81 bp
Sequences
Splice sites
3' ss Seq
ACCCCTTACCTTGTACACAGGAT
3' ss Score
9.03
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
Exon sequences
Seq C1 exon
GAGTTAGTGAGCTTTGATGATGTGATTGTGGACTTTACCCAAGAGGAGTGGACCTCACTGAACCCAGATCAGAGAACCCTCTACCGAGAGGTGATGCTGGAGAACTACAAGAACCTGGCCACAGTAG
Seq A exon
GATATCAGCTCATCAAACCCAGTGTGATCTCTTGGTTGGAACAAGAAGAGTTTAGTACAGGGCAGAAGATAGTTTTTCCAG
Seq C2 exon
AATGGAAAATACAGCTCGAGACCCAGTGTTCAGCATCCCAGCAGGAGCTTTTGAGGGGTAACATATCCAACGGGATGCAAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000033624-'9-8,'9-7,10-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.286
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTACCCAAGAGGAGTGGACCT
R:
TCCCGTTGGATATGTTACCCCT
Band lengths:
168-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]