BtaEX6037757 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016077 | ZNF317
Description
zinc finger protein 317 [Source:HGNC Symbol;Acc:HGNC:13507]
Coordinates
chr7:14743866-14745110:+
Coord C1 exon
chr7:14743866-14743992
Coord A exon
chr7:14744446-14744541
Coord C2 exon
chr7:14745028-14745110
Length
96 bp
Sequences
Splice sites
3' ss Seq
ATGTCTTTCCCTGTGAGTAGGGT
3' ss Score
6.55
5' ss Seq
CCGGTAAGC
5' ss Score
8.8
Exon sequences
Seq C1 exon
GAATCAGTGACTTTCCAGGATGTTGCTGTGGACTTCACTGAGAAGGAGTGGCCCTTGCTGGACTCTACTCAGAGAAAACTATACAAAGATGTGATGCTGGAGAACTACAGCAACCTTGCTTCAGTGG
Seq A exon
GGTGCCAGGTGGGCAAACCCAGCCTCATCTCCCACTTGGAGCAAGAAGAGGAGCTGAGGACAGAGGATCGGGAACTTCACCGAGGCCCTTGTCCCG
Seq C2 exon
ATTGGGCAATGCCATCTAAAACCAAATGGTCAATTCTTATGGAAGATATTTTTGGGAAGGAAACATCTAATGGTGTGACAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016077-'7-8,'7-7,9-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.070 A=0.576 C2=0.179
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCACTGAGAAGGAGTGGCCC
R:
CACACCATTAGATGTTTCCTTCCCA
Band lengths:
171-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]