MmuEX7006005 @ mm10
Exon Skipping
Gene
ENSMUSG00000057551 | Zfp317
Description
zinc finger protein 317 [Source:MGI Symbol;Acc:MGI:107775]
Coordinates
chr9:19642598-19645307:+
Coord C1 exon
chr9:19642598-19642724
Coord A exon
chr9:19643609-19643704
Coord C2 exon
chr9:19645225-19645307
Length
96 bp
Sequences
Splice sites
3' ss Seq
GTGCCTTTCCCCATAAATAGGTT
3' ss Score
8.9
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GAGTCTGTGACATTTCAAGATATTGCTGTGGACTTTACTGAGAAAGAGTGGCCCCTGCTAGATTCTTCCCAGAGAAAACTGTACAAAGATGTAATGCTGGAGAATTATAGCAATCTAAGTTCACTGG
Seq A exon
GTTATCAGGTTGGCAAACCCCGCCTCATCTCACACCTAGAGCAAGAAGAGGATCTGAGAATGGAGGAGAGAGGAATTCAACAGGGTCCTTCTCCAG
Seq C2 exon
ATTGGGGAACTACATCTAAAGTCAAATGGTCTATTCTTCTGGAAGATATTTTTGGGAAGGAAGCATCTGATGATGTAAGATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000057551-'17-25,'17-16,20-25=AN
Average complexity
A_C1
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.636 C2=0.036
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACTGAGAAAGAGTGGCCCCT
R:
CATCATCAGATGCTTCCTTCCCA
Band lengths:
167-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types