HsaEX0073399 @ hg19
Exon Skipping
Gene
ENSG00000130803 | ZNF317
Description
zinc finger protein 317 [Source:HGNC Symbol;Acc:13507]
Coordinates
chr19:9267944-9269584:+
Coord C1 exon
chr19:9267944-9268070
Coord A exon
chr19:9268656-9268751
Coord C2 exon
chr19:9269502-9269584
Length
96 bp
Sequences
Splice sites
3' ss Seq
TGTCTTTCCCGTGAGTGTAGGGT
3' ss Score
2.99
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GAATCGGTGACTTTCCAAGATGTCGCTGTGGACTTTACCGAGAAGGAGTGGCCCTTGCTGGATTCTTCTCAGAGAAAACTGTACAAAGATGTAATGCTGGAGAACTACAGCAACCTCACTTCACTGG
Seq A exon
GGTATCAGGTCGGCAAACCCAGCCTCATCTCACACTTGGAGCAGGAGGAGGAGCCGAGGACAGAGGAGAGGGGCGCTCACCAGGGCGCTTGTGCAG
Seq C2 exon
ATTGGGAGACTCCATCTAAAACCAAGTGGTCACTTCTTATGGAAGATATTTTTGGGAAGGAAACGCCCAGTGGTGTGACGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000130803_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.040 A=0.788 C2=0.233
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCGCTGTGGACTTTACCGAG
R:
TGGGCGTTTCCTTCCCAAAAA
Band lengths:
175-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)