HsaEX0073399 @ hg38
Exon Skipping
Gene
ENSG00000130803 | ZNF317
Description
zinc finger protein 317 [Source:HGNC Symbol;Acc:HGNC:13507]
Coordinates
chr19:9157268-9158908:+
Coord C1 exon
chr19:9157268-9157394
Coord A exon
chr19:9157980-9158075
Coord C2 exon
chr19:9158826-9158908
Length
96 bp
Sequences
Splice sites
3' ss Seq
TGTCTTTCCCGTGAGTGTAGGGT
3' ss Score
2.99
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GAATCGGTGACTTTCCAAGATGTCGCTGTGGACTTTACCGAGAAGGAGTGGCCCTTGCTGGATTCTTCTCAGAGAAAACTGTACAAAGATGTAATGCTGGAGAACTACAGCAACCTCACTTCACTGG
Seq A exon
GGTATCAGGTCGGCAAACCCAGCCTCATCTCACACTTGGAGCAGGAGGAGGAGCCGAGGACAGAGGAGAGGGGCGCTCACCAGGGCGCTTGTGCAG
Seq C2 exon
ATTGGGAGACTCCATCTAAAACCAAGTGGTCACTTCTTATGGAAGATATTTTTGGGAAGGAAACGCCCAGTGGTGTGACGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000130803-'9-10,'9-8,11-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.023 A=0.703 C2=0.131
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCGCTGTGGACTTTACCGAG
R:
TGGGCGTTTCCTTCCCAAAAA
Band lengths:
175-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development