RnoEX0101247 @ rn6
Exon Skipping
Gene
ENSRNOG00000006684 | Zfp317
Description
zinc finger protein 317 [Source:RGD Symbol;Acc:1565419]
Coordinates
chr8:19887752-19910236:+
Coord C1 exon
chr8:19887752-19887878
Coord A exon
chr8:19888806-19888901
Coord C2 exon
chr8:19903804-19910236
Length
96 bp
Sequences
Splice sites
3' ss Seq
GTGTCTTTCCCCGTGAGTAGGTT
3' ss Score
6.81
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GAGTTCGTGACATTTCAAGATATTGCTGTTGACTTTACTGAGAAAGAGTGGCCCCTGCTAGATTCTTCTCAGAGAAAACTGTACAAAGATGTAATGCTGGAGAATTATAGCAATCTAAGTTCATTGG
Seq A exon
GTTTTCAGGTTGGCAAACCCCGCCTCATCTCACACCTAGAGCAAGAAGAGGAGCTGAGAATGGAGGAGAGAGGCATTCAGCAGTGTCCTTCTCCAG
Seq C2 exon
TGATTAGAGAAGTCTTTCCTCATCTCACCTTTGTTCCTCATGGGAGAAATCAGAGTTTTTTTAAAAAACAAAACAAAACAAACAAACAAACAAAAAAAACCCCTCAGAAATAACCTTGGAAAAGTACATTAAAAATAGGAAAGCAACCTGGCCATTTCTTTATTGATTTTGGCTCAGAAGACAAGAATGCTTCTTTCTTTTTAAAAAGAAAAATCTGGCAGAGGCAGTACATGGCACTCAAATTCTGTTTATAAAAATATTCTTTTAGGGCTTTAGTCAGTAGCATTGGATCTCAACCTGGAGCACTTTTGCTCTCCAGGGCAGTTGTGTCTGGGAAGATTTTGGTTTTAAGAATGGAGAGAGGTGCTACAGACGATCACAGATGCTATCAAATAGCCTATGATATATAGAAGTCTTCCTATGTGTACAACTGTAAAAGTACTGAGTTTGAGAACAGTCTCATTCATTCCTTGGGTACTGTGATTCCTGTGAACACTAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006684_MULTIEX2-3/5=2-C2
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.393 C2=NA
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGTGACATTTCAAGATATTGCTGT
R:
CCCATGAGGAACAAAGGTGAGA
Band lengths:
167-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]