HsaEX6092691 @ hg19
Exon Skipping
Gene
ENSG00000196110 | ZNF699
Description
zinc finger protein 699 [Source:HGNC Symbol;Acc:24750]
Coordinates
chr19:9407972-9413180:-
Coord C1 exon
chr19:9413054-9413180
Coord A exon
chr19:9408556-9408666
Coord C2 exon
chr19:9407972-9408155
Length
111 bp
Sequences
Splice sites
3' ss Seq
ATGCCTTTCTGCTTGTGCAGGGT
3' ss Score
8.68
5' ss Seq
AAGGCAAGA
5' ss Score
2.81
Exon sequences
Seq C1 exon
GACTCAGTAGTCTTTGAGGATGTGGCTGTGGACTTTACCCAGGAGGAATGGGCTTTGCTGGATCTTGCTCAGAGAAACCTCTACAGAGATGTGATGCTGGAAAACTTCCAGAACCTGGCCTCACTAG
Seq A exon
GGTATCCGCTACACACACCCCATCTGATCTCCCAGTGGGAACAAGAGGAGGACCTGCAGACAGTGAAGAGAGAACTTATCCAGGGCATCTTTATGGGAGAGCACCGGGAAG
Seq C2 exon
GTTTTGAGACTCAACTTAAAACTAATGAATCAGTTGCTTCACAAGATATTTGTGGAGAAAAAATATCCAATGAACAGAAAATAGTAAGATTCAAAAGGAATGATTCCTGGTTCTCCAGTTTACATGAAAACCAGGAGTCCTGTGGTATTGATTATCAGAACAAAAGCCATGAGAGACATTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196110-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.097
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTTTGCTGGATCTTGCTCA
R:
TGTCTCTCATGGCTTTTGTTCTGA
Band lengths:
255-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)