HsaEX6092691 @ hg38
Exon Skipping
Gene
ENSG00000196110 | ZNF699
Description
zinc finger protein 699 [Source:HGNC Symbol;Acc:HGNC:24750]
Coordinates
chr19:9297296-9302504:-
Coord C1 exon
chr19:9302378-9302504
Coord A exon
chr19:9297880-9297990
Coord C2 exon
chr19:9297296-9297479
Length
111 bp
Sequences
Splice sites
3' ss Seq
ATGCCTTTCTGCTTGTGCAGGGT
3' ss Score
8.68
5' ss Seq
AAGGCAAGA
5' ss Score
2.81
Exon sequences
Seq C1 exon
GACTCAGTAGTCTTTGAGGATGTGGCTGTGGACTTTACCCAGGAGGAATGGGCTTTGCTGGATCTTGCTCAGAGAAACCTCTACAGAGATGTGATGCTGGAAAACTTCCAGAACCTGGCCTCACTAG
Seq A exon
GGTATCCGCTACACACACCCCATCTGATCTCCCAGTGGGAACAAGAGGAGGACCTGCAGACAGTGAAGAGAGAACTTATCCAGGGCATCTTTATGGGAGAGCACCGGGAAG
Seq C2 exon
GTTTTGAGACTCAACTTAAAACTAATGAATCAGTTGCTTCACAAGATATTTGTGGAGAAAAAATATCCAATGAACAGAAAATAGTAAGATTCAAAAGGAATGATTCCTGGTTCTCCAGTTTACATGAAAACCAGGAGTCCTGTGGTATTGATTATCAGAACAAAAGCCATGAGAGACATTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196110_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.097
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTTTGCTGGATCTTGCTCA
R:
TGTCTCTCATGGCTTTTGTTCTGA
Band lengths:
255-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains