HsaEX0073653 @ hg38
Exon Skipping
Gene
ENSG00000118620 | ZNF430
Description
zinc finger protein 430 [Source:HGNC Symbol;Acc:HGNC:20808]
Coordinates
chr19:21033456-21060050:+
Coord C1 exon
chr19:21033456-21033582
Coord A exon
chr19:21034086-21034184
Coord C2 exon
chr19:21056631-21060050
Length
99 bp
Sequences
Splice sites
3' ss Seq
GTTATTTATTTTCAATAAAGCAG
3' ss Score
0.79
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
Exon sequences
Seq C1 exon
GGGCCATTGACATTTAGGGATGTGGCCATAGAATTTTCTCTGGAGGAGTGGCAATGCCTGGACACTGCTCAGCAGGATTTGTATAGAAAAGTGATGTTAGAGAACTACAGAAACCTGGTCTTCTTGG
Seq A exon
CAGGTATTGCTGTTTCTAAGCCAGACCTGATCACCTGTCTAGAGCAAGGAAAAGAGCCCTGGAATATGAAGAGACATGCGATGGTAGATCAACCCCCAG
Seq C2 exon
TTACATATTCTCATTTTGCCCAAGACCTTTGGCCAGAGCAGGGCATAAAAGATTCTTTCCAAGAAGTCATATTGAGAAGATATGGAAAATGTGGACATGAAGATTTACAGTTAAGAACAGGCTGTAAAAGTGTGGATGAGTGTAATCTGCACAAAGAATGTTATGATGAACTAAACCAGTGTTTGACAACTACCCAGAGTGAAATATTTCAATATGATAAATATGTGAATGTCTTTTATAAATTTTCAAATCCAAATATACAAAAGATAAGACATACTGGAAAGAAGCCTTTCAAATGTAAAAAATGTGACAAATCGTTTTGCATGCTTTTACACCTAACTCAACATAAAAGAATTCATATTAGGGAAAATTCTTACCAATGTGAAGAATGTGGTAAAGTCTTTAACTGGTTCTCAACCCTTACTAGACACAGAAGAATTCATACTGGAGAGAAACCCTACAAATGTGAACAATGTGGCAAAGCTTTTAAGCAGTCCTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000118620-'5-13,'5-5,7-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.049 C2=0.004
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.6),PF134651=zf-H2C2_2=WD(100=5.6),PF134651=zf-H2C2_2=WD(100=5.6),PF134651=zf-H2C2_2=WD(100=5.6),PF134651=zf-H2C2_2=WD(100=5.6),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.6),PF134651=zf-H2C2_2=WD(100=5.6),PF134651=zf-H2C2_2=WD(100=5.6),PF134651=zf-H2C2_2=WD(100=5.6),PF134651=zf-H2C2_2=WD(100=5.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGCCATTGACATTTAGGGATGT
R:
CTGCTCTGGCCAAAGGTCTTG
Band lengths:
168-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development