HsaEX0073677 @ hg38
Exon Skipping
Gene
ENSG00000140987 | ZSCAN32
Description
zinc finger and SCAN domain containing 32 [Source:HGNC Symbol;Acc:HGNC:20812]
Coordinates
chr16:3393649-3397745:-
Coord C1 exon
chr16:3397192-3397745
Coord A exon
chr16:3396560-3396646
Coord C2 exon
chr16:3393649-3393814
Length
87 bp
Sequences
Splice sites
3' ss Seq
CTTATATTTTCTTGGAGCAGGGA
3' ss Score
4.42
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
Exon sequences
Seq C1 exon
GACACTCTCATGTCCCACGGATTACAGAAAGACATTCCTTGCAGGAGAACATGGCTTCCCAGTGATGTGGGAAAGATGGACTCTGATCTCCAGGGTAGAAGTGGCAACCAGAGTAAGCCAGTTCGTTGAAGCAAATGATGGCTGCAGTGAAGAGTACCGAGGCACACCCATCCTCAAACAAGGATCCCACACAGGGCCAGAAATCAGCCCTCCAGGGTAACAGCCCTGACTCCGAGGCCTCCCGTCAGCGCTTCAGGCAGTTTTGCTACCAGGAGGTAACTGGCCCACATGAAGCTTTTAGCAAACTCTGGGAACTCTGTTGTCAGTGGCTGAGGCCGAAGACCCACTCAAAAGAGGAAATCCTGGAGCTGCTGGTTTTGGAGCAGTTTCTGACTATCTTGCCAGAGGAGATCCAGACCTGGGTGAGGGAGCAGCATCCAGAAAACGGCGAGGAAGCTGTGGCTCTGGTTGAGGATGTACAGAGAGCTCCTGGACAACAG
Seq A exon
GGAGGTGGGAAAGGCACAGGAAGAGGAAAAGTAACATACCAGCTTCGGTTGTGGAAGAGTTGGTAGGAGGAAGGCAACTGAAATTGG
Seq C2 exon
GTTCTAGATTCTGAGAAGGACTTGAAAGTACTCATGAAGGAGATGGCCCCTTTGGGAGCAACCAGAGAATCACTGAGATCCCAATGGAAACAGGAGGTTCAGCCAGAGGAACCGACTTTTAAGGGATCACAGAGCTCACACCAAAGACCAGGGGAACAGTCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000140987-'4-13,'4-12,5-13
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.463 A=0.333 C2=0.736
Domain overlap (PFAM):
C1:
PF0202312=SCAN=PU(94.8=74.6)
A:
PF0202312=SCAN=PD(2.1=9.1)
C2:
PF0202312=SCAN=PD(3.1=5.4)
Main Inclusion Isoform:
ENST00000574940fB8137
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCCAGAAAACGGCGAGGAA
R:
CTGGCTGAACCTCCTGTTTCC
Band lengths:
172-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development