HsaEX1046517 @ hg38
Exon Skipping
Gene
ENSG00000140987 | ZSCAN32
Description
zinc finger and SCAN domain containing 32 [Source:HGNC Symbol;Acc:HGNC:20812]
Coordinates
chr16:3384459-3401065:-
Coord C1 exon
chr16:3400945-3401065
Coord A exon
chr16:3397192-3397397
Coord C2 exon
chr16:3384459-3384941
Length
206 bp
Sequences
Splice sites
3' ss Seq
GGTAACTGGCCCACATGAAGCTT
3' ss Score
-1.4
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
AGTCCGGCAATTCGGCTTGCGGGCCTGCGCAGGGGCGTGCGTAATGGGCGGAGCGAATCGCGCCGCTGACTTCCGGCCCGGAGGCTGAGGGAGTTTGTGGAGTCGCGAGTGCTGGTGTCCG
Seq A exon
CTTTTAGCAAACTCTGGGAACTCTGTTGTCAGTGGCTGAGGCCGAAGACCCACTCAAAAGAGGAAATCCTGGAGCTGCTGGTTTTGGAGCAGTTTCTGACTATCTTGCCAGAGGAGATCCAGACCTGGGTGAGGGAGCAGCATCCAGAAAACGGCGAGGAAGCTGTGGCTCTGGTTGAGGATGTACAGAGAGCTCCTGGACAACAG
Seq C2 exon
CAACAGGTGTGCCCTGGGGCTATGAAGAGACCAAGACGCTCCTGGCTATTCTTAGTAGTTCTCAATTTTATGGAAAACTCCAGACCTGTCAGCAGAACAGCCAGATCTACAGGGCCATGGCGGAAGGACTCTGGGAGCAGGGTTTTCTGCGGACCCCAGAACAGTGTCGCACCAAGTTCAAAAGCCTACAGTTGAGTTACCGCAAAGTGAGGAGAGGCCGTGTGCCTGAGCCTTGTATCTTTTATGAGGAAATGAATGCTCTTTCAGGCTCCTGGGCCTCTGCACCTCCTATGGCAAGCGATGCTGTTCCTGGCCAAGAAGGAAGTGATATTGAGGCTGGAGAGCTGAATCACCAGAATGGGGAACCCACGGAGGTAGAAGATGGCACTGTGGATGGTGCAGACAGGGATGAAAAGGACTTCAGGAATCCTGGCCAGGAAGTCAGGAAACTAGACCTGCCAGTGCTGTTCCCAAACAGACTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000140987_MULTIEX1-2/6=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.462 C2=0.373
Domain overlap (PFAM):
C1:
NA
A:
PF0202312=SCAN=PU(94.8=74.6)
C2:
PF138371=Myb_DNA-bind_4=WD(100=53.1)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTTTGTGGAGTCGCGAGTG
R:
CCAGGAGCCTGAAAGAGCATT
Band lengths:
306-512
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains