HsaEX0073674 @ hg38
Exon Skipping
Gene
ENSG00000140987 | ZSCAN32
Description
zinc finger and SCAN domain containing 32 [Source:HGNC Symbol;Acc:HGNC:20812]
Coordinates
chr16:3384459-3393814:-
Coord C1 exon
chr16:3393649-3393814
Coord A exon
chr16:3390423-3390517
Coord C2 exon
chr16:3384459-3384941
Length
95 bp
Sequences
Splice sites
3' ss Seq
GCGGCTGTTTTTTCCCCCAGCCT
3' ss Score
7.47
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GTTCTAGATTCTGAGAAGGACTTGAAAGTACTCATGAAGGAGATGGCCCCTTTGGGAGCAACCAGAGAATCACTGAGATCCCAATGGAAACAGGAGGTTCAGCCAGAGGAACCGACTTTTAAGGGATCACAGAGCTCACACCAAAGACCAGGGGAACAGTCAGAAG
Seq A exon
CCTGGCTTGCTCCTCAGGCTCCCAGGAACCTGCCTCAAAACACAGGTCTCCACGACCAGGAGACAGGTGCTGTGGTCTGGACAGCTGGGTCCCAG
Seq C2 exon
CAACAGGTGTGCCCTGGGGCTATGAAGAGACCAAGACGCTCCTGGCTATTCTTAGTAGTTCTCAATTTTATGGAAAACTCCAGACCTGTCAGCAGAACAGCCAGATCTACAGGGCCATGGCGGAAGGACTCTGGGAGCAGGGTTTTCTGCGGACCCCAGAACAGTGTCGCACCAAGTTCAAAAGCCTACAGTTGAGTTACCGCAAAGTGAGGAGAGGCCGTGTGCCTGAGCCTTGTATCTTTTATGAGGAAATGAATGCTCTTTCAGGCTCCTGGGCCTCTGCACCTCCTATGGCAAGCGATGCTGTTCCTGGCCAAGAAGGAAGTGATATTGAGGCTGGAGAGCTGAATCACCAGAATGGGGAACCCACGGAGGTAGAAGATGGCACTGTGGATGGTGCAGACAGGGATGAAAAGGACTTCAGGAATCCTGGCCAGGAAGTCAGGAAACTAGACCTGCCAGTGCTGTTCCCAAACAGACTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000140987_MULTIEX1-5/6=4-C2
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.736 A=0.800 C2=0.373
Domain overlap (PFAM):
C1:
PF0202312=SCAN=PD(3.1=5.4)
A:
PF0202312=SCAN=PD(2.1=6.2)
C2:
PF138371=Myb_DNA-bind_4=WD(100=53.1)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATGAAGGAGATGGCCCCTT
R:
TGGTCTCTTCATAGCCCCAGG
Band lengths:
168-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development