HsaINT0187232 @ hg38
Intron Retention
Gene
ENSG00000140987 | ZSCAN32
Description
zinc finger and SCAN domain containing 32 [Source:HGNC Symbol;Acc:HGNC:20812]
Coordinates
chr16:3390010-3390517:-
Coord C1 exon
chr16:3390423-3390517
Coord A exon
chr16:3390184-3390422
Coord C2 exon
chr16:3390010-3390183
Length
239 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
TGTCTCTGCCCCCACCCCAGGCT
3' ss Score
7.31
Exon sequences
Seq C1 exon
CCTGGCTTGCTCCTCAGGCTCCCAGGAACCTGCCTCAAAACACAGGTCTCCACGACCAGGAGACAGGTGCTGTGGTCTGGACAGCTGGGTCCCAG
Seq A exon
GTGAGCTGTGGTTGATGCCTTCTGTCTCTTGAGTACCCACTCTCACCCCAAAACCCTCCTCCTTTCCAGAGACATGAGAAAGATTCTGTGTGGTCCATGGGGCTTCTCGGGTTATTTTGATTCTGTCCACTCTGACATCATCACATGGCTCAGAACCTGTCCCACTGGGAGCTGACCTCCCCTGCCTTTGCCTTGCCCCTGATCTGACAACTGTGATCCTGTCTCTGCCCCCACCCCAG
Seq C2 exon
GCTAGAGTGGTGCTATTTTATCGGTAGCAGCAGCTCCAGTGTTGTTACAGGGACCAGCCATGCGTGACAACAGAGCTGTATCCCTCTGTCAGCAAGAATGGATGTGCCCAGGCCCTGCACAAAGGGCCCTCTACAGGGGTGCCACCCAGAGGAAGGACAGTCACGTCTCGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000140987:ENST00000304926:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.800 A=NA C2=0.096
Domain overlap (PFAM):
C1:
PF0202312=SCAN=PD(2.1=6.2)
A:
NA
C2:
PF0135222=KRAB=WD(100=84.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGGCTTGCTCCTCAGGC
R:
CAGCGAGACGTGACTGTCCTT
Band lengths:
268-507
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains