HsaINT0187232 @ hg19
Intron Retention
Gene
ENSG00000140987 | ZNF434
Description
zinc finger protein 434 [Source:HGNC Symbol;Acc:20812]
Coordinates
chr16:3440010-3440517:-
Coord C1 exon
chr16:3440423-3440517
Coord A exon
chr16:3440184-3440422
Coord C2 exon
chr16:3440010-3440183
Length
239 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
TGTCTCTGCCCCCACCCCAGGCT
3' ss Score
7.31
Exon sequences
Seq C1 exon
CCTGGCTTGCTCCTCAGGCTCCCAGGAACCTGCCTCAAAACACAGGTCTCCACGACCAGGAGACAGGTGCTGTGGTCTGGACAGCTGGGTCCCAG
Seq A exon
GTGAGCTGTGGTTGATGCCTTCTGTCTCTTGAGTACCCACTCTCACCCCAAAACCCTCCTCCTTTCCAGAGACATGAGAAAGATTCTGTGTGGTCCATGGGGCTTCTCGGGTTATTTTGATTCTGTCCACTCTGACATCATCACATGGCTCAGAACCTGTCCCACTGGGAGCTGACCTCCCCTGCCTTTGCCTTGCCCCTGATCTGACAACTGTGATCCTGTCTCTGCCCCCACCCCAG
Seq C2 exon
GCTAGAGTGGTGCTATTTTATCGGTAGCAGCAGCTCCAGTGTTGTTACAGGGACCAGCCATGCGTGACAACAGAGCTGTATCCCTCTGTCAGCAAGAATGGATGTGCCCAGGCCCTGCACAAAGGGCCCTCTACAGGGGTGCCACCCAGAGGAAGGACAGTCACGTCTCGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000140987-ZNF434:NM_017810:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.090
Domain overlap (PFAM):
C1:
PF0202312=SCAN=PD(2.1=6.2)
A:
NA
C2:
PF0135222=KRAB=WD(100=84.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGGCTTGCTCCTCAGGC
R:
CAGCGAGACGTGACTGTCCTT
Band lengths:
268-507
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)