HsaALTA0009824-1/2 @ hg19
Alternative 3'ss
Gene
ENSG00000140987 | ZNF434
Description
zinc finger protein 434 [Source:HGNC Symbol;Acc:20812]
Coordinates
chr16:3440010-3440517:-
Coord C1 exon
chr16:3440423-3440517
Coord A exon
NA
Coord C2 exon
chr16:3440010-3440133
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
CAGCTCCAGTGTTGTTACAGGGA
3' ss Score
2.17
Exon sequences
Seq C1 exon
CCTGGCTTGCTCCTCAGGCTCCCAGGAACCTGCCTCAAAACACAGGTCTCCACGACCAGGAGACAGGTGCTGTGGTCTGGACAGCTGGGTCCCAG
Seq A exon
NA
Seq C2 exon
GGACCAGCCATGCGTGACAACAGAGCTGTATCCCTCTGTCAGCAAGAATGGATGTGCCCAGGCCCTGCACAAAGGGCCCTCTACAGGGGTGCCACCCAGAGGAAGGACAGTCACGTCTCGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000140987-18-20,18-19-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.114
Domain overlap (PFAM):
C1:
PF0202312=SCAN=PD(2.1=6.2)
A:
NA
C2:
PF0135222=KRAB=WD(100=78.6)
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGGAACCTGCCTCAAAACA
R:
CTGGGCACATCCATTCTTGCT
Band lengths:
135-185
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)