HsaALTA0009824-2/2 @ hg19
Alternative 3'ss
Gene
ENSG00000140987 | ZNF434
Description
zinc finger protein 434 [Source:HGNC Symbol;Acc:20812]
Coordinates
chr16:3440010-3440517:-
Coord C1 exon
chr16:3440423-3440517
Coord A exon
chr16:3440134-3440183
Coord C2 exon
chr16:3440010-3440133
Length
50 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
TGTCTCTGCCCCCACCCCAGGCT
3' ss Score
7.31
Exon sequences
Seq C1 exon
CCTGGCTTGCTCCTCAGGCTCCCAGGAACCTGCCTCAAAACACAGGTCTCCACGACCAGGAGACAGGTGCTGTGGTCTGGACAGCTGGGTCCCAG
Seq A exon
GCTAGAGTGGTGCTATTTTATCGGTAGCAGCAGCTCCAGTGTTGTTACAG
Seq C2 exon
GGACCAGCCATGCGTGACAACAGAGCTGTATCCCTCTGTCAGCAAGAATGGATGTGCCCAGGCCCTGCACAAAGGGCCCTCTACAGGGGTGCCACCCAGAGGAAGGACAGTCACGTCTCGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000140987-18-20,18-19-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.114
Domain overlap (PFAM):
C1:
PF0202312=SCAN=PD(2.1=6.2)
A:
NA
C2:
PF0135222=KRAB=WD(100=78.6)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGGAACCTGCCTCAAAACA
R:
CTGGGCACATCCATTCTTGCT
Band lengths:
135-185
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)