HsaEX0073678 @ hg38
Exon Skipping
Gene
ENSG00000140987 | ZSCAN32
Description
zinc finger and SCAN domain containing 32 [Source:HGNC Symbol;Acc:HGNC:20812]
Coordinates
chr16:3384459-3397787:-
Coord C1 exon
chr16:3397192-3397787
Coord A exon
chr16:3393649-3393814
Coord C2 exon
chr16:3384459-3384941
Length
166 bp
Sequences
Splice sites
3' ss Seq
ATAATGGGGTCTGTTCTCAGGTT
3' ss Score
7.58
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
GACACTCTCATGTCCCACGGATTACAGAAAGACATTCCTTGCAGGAGAACATGGCTTCCCAGTGATGTGGGAAAGATGGACTCTGATCTCCAGGGTAGAAGTGGCAACCAGAGTAAGCCAGTTCGTTGAAGCAAATGATGGCTGCAGTGAAGAGTACCGAGGCACACCCATCCTCAAACAAGGATCCCACACAGGGCCAGAAATCAGCCCTCCAGGGTAACAGCCCTGACTCCGAGGCCTCCCGTCAGCGCTTCAGGCAGTTTTGCTACCAGGAGGTAACTGGCCCACATGAAGCTTTTAGCAAACTCTGGGAACTCTGTTGTCAGTGGCTGAGGCCGAAGACCCACTCAAAAGAGGAAATCCTGGAGCTGCTGGTTTTGGAGCAGTTTCTGACTATCTTGCCAGAGGAGATCCAGACCTGGGTGAGGGAGCAGCATCCAGAAAACGGCGAGGAAGCTGTGGCTCTGGTTGAGGATGTACAGAGAGCTCCTGGACAACAG
Seq A exon
GTTCTAGATTCTGAGAAGGACTTGAAAGTACTCATGAAGGAGATGGCCCCTTTGGGAGCAACCAGAGAATCACTGAGATCCCAATGGAAACAGGAGGTTCAGCCAGAGGAACCGACTTTTAAGGGATCACAGAGCTCACACCAAAGACCAGGGGAACAGTCAGAAG
Seq C2 exon
CAACAGGTGTGCCCTGGGGCTATGAAGAGACCAAGACGCTCCTGGCTATTCTTAGTAGTTCTCAATTTTATGGAAAACTCCAGACCTGTCAGCAGAACAGCCAGATCTACAGGGCCATGGCGGAAGGACTCTGGGAGCAGGGTTTTCTGCGGACCCCAGAACAGTGTCGCACCAAGTTCAAAAGCCTACAGTTGAGTTACCGCAAAGTGAGGAGAGGCCGTGTGCCTGAGCCTTGTATCTTTTATGAGGAAATGAATGCTCTTTCAGGCTCCTGGGCCTCTGCACCTCCTATGGCAAGCGATGCTGTTCCTGGCCAAGAAGGAAGTGATATTGAGGCTGGAGAGCTGAATCACCAGAATGGGGAACCCACGGAGGTAGAAGATGGCACTGTGGATGGTGCAGACAGGGATGAAAAGGACTTCAGGAATCCTGGCCAGGAAGTCAGGAAACTAGACCTGCCAGTGCTGTTCCCAAACAGACTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000140987_MULTIEX1-4/6=2-C2
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
Show structural model
Features
Disorder rate (Iupred):
C1=0.462 A=0.736 C2=0.373
Domain overlap (PFAM):
C1:
PF0202312=SCAN=PU(94.8=74.6)
A:
PF0202312=SCAN=PD(3.1=5.4)
C2:
PF138371=Myb_DNA-bind_4=WD(100=53.1)
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCCAGAAAACGGCGAGGAA
R:
AGGCTTTTGAACTTGGTGCGA
Band lengths:
253-419
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development