HsaINT0187233 @ hg38
Intron Retention
Gene
ENSG00000140987 | ZSCAN32
Description
zinc finger and SCAN domain containing 32 [Source:HGNC Symbol;Acc:HGNC:20812]
Coordinates
chr16:3384459-3390183:-
Coord C1 exon
chr16:3390010-3390183
Coord A exon
chr16:3384942-3390009
Coord C2 exon
chr16:3384459-3384941
Length
5068 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
3' ss Seq
ACCTATTCTTTGTCCCCCAGCAA
3' ss Score
7.96
Exon sequences
Seq C1 exon
GCTAGAGTGGTGCTATTTTATCGGTAGCAGCAGCTCCAGTGTTGTTACAGGGACCAGCCATGCGTGACAACAGAGCTGTATCCCTCTGTCAGCAAGAATGGATGTGCCCAGGCCCTGCACAAAGGGCCCTCTACAGGGGTGCCACCCAGAGGAAGGACAGTCACGTCTCGCTGG
Seq A exon
GTAAGGATCCATCTTCCCTCCAGGTCAAGGTGGATGTGTTCAGTTGTTCAGAGAGGCTGAAAGGACTTGAGAGGGAGGGAGACAGAGGGAGTGGGGAGACTGTTGGGTGGAGGGAAAGGAGGAAGTAAATGGGGAACCAGAGCAGGCCAGAGAGACACAGGCAGAGATCAAAAGAAAGGGGCAGCATGTGTGACCGGCAGTCAAGAACATGGGAGGTGAAGGGTGAGGCGGTGGAGAAGCAAAATGTTAGTGAGACAGAGTCAGAACAAGTAGTCCAGAGCCGGAGCCAGACAGGTGGCCACCAGGAGCACAGATGTGTTCATGCTGAATGTGCGCTCATGCACACAGGTAGCAGTAGTCGCTCCCGAGTTTCCCCAGTGGCAGAGGAGATTAACAAATAAAACCACCCAACCAGGACAGTCTACTATGCCCAGGCCTTCCGGGAGGAACCAGGCCCTTTCCCAGCATCTCAGGACACTTGGGGAAGGTTCTGCCAAGCAGACCGCTCTCTTGCCTTTCTCAAATCAGTTCTGTCCCATCTGGGCCAAATGCCTCCTCCTCAGAGCAGCCTCCCTGACCATGCAGATTCAGAGACAGACACTGCAGCTCACTGGGCCTAGATTTCTCCTCTGCTGCTTCACATGCAGGGTACTCCTGGCTAAGCCCAGGGTGGGAGGGACTACACAAGGCTGTGAACACAGGCCCTGTGACAGTGCCCCGCCTCACTCTACAATGTTGCCCTCCCCAGTGGTGTGTGGTTTTTCCCTGCTCTGCCCCTGCCATCCCTCCCCTCCTTTGCCAGGAACTCCCAGTTTCCTGGCTTCATCATGTGCCATTTCTTGCTGCTGCTTCAGGCTTCTGCACCTCATCTCTGTCCAGTTGCAGGAGAGTATAGTGTCTTTTTGAGCTCTGTATTGAGATTTGTATTACTAAGTATATATGGATAATACAATAAGGTGAGATATAAATATTTTTGTACTTGTGATTTTTAACTTATTAGGTGAAATTCACATGACATAAAATTAACCACTGTAAAGTGAACAATTCTTTGGCCTCTAGCACTTTCAGAGTGTTGTATAATTACCACCACGTCCAGTTCCAGAACCTTTCCATCTCTCCAAAGTAAGGTCCCACAACCATCCAGCAGTTTCTCCCCGTCCTTCCCCTGCAAGCCCTTTGCAGACACCAGTCTTCATTCTGTCTCTGTGGATTGAGCTATTCTGAATATTTCATGTAATGGTACCTGTAATTTTAACTGCTACAACATTAGGCTTATTGAATGAGGGCTTGTATTCCCCACACACTTTTGGTTTCTTGTCAACCATTGAGGATCCTTTAAAATTAGAGGTAAGAGTTGAGACAGAATGTGAGAGGACAAGTCATTCTTTCCACAAATATTAATTTAGTGCCTACAGTATCTCAGACCTAGTTCTAGGTCGTTAGGGATACAACAGTGAACAAACAGATAAAGATTCCTGCCCTGTGGGAAGAGACAGACCATAGCATAATCAGTAAGCGGCAGAAGATGTTAGAGGGCGATAAGCGCAATGGGAGAGAAGCAGCAGCAGAGCAGCGTGATGGGAGTGCTAGGGCAGAGGTTGGTTTGCAGTTTTCAGTTTGGGTCCTCAGGGTCGCCCTCACTGAGAAAATGACATTTGAAAAGACTTGCTGAAGGAGGAGGGATGAGCTATGCAGCCATATCCTACATGGAGGAAGAGTGTAAGACAGACGCAATGACTTGGGCTGGAGCGAGGTGGGCATGCCAGTTCACTGGCACAGAGTACACCCATGAGTAATGAGAAAACGAGCTCAGAAAGCCAGATCAAATGAGTGCTGCTAGCTGAGACTGAGAGGGAGCAATTAGAAACTTTTATAACAATTTGACACTGCTGCACTATTCGGTTGCATTTTTATTGTATTTTACAAAAGAAATAAGCACAAGACTCCTGTCCTTCATAGATAATTTGAGAAGTACTAATATGGGATCATGAGGCCCTACATGAAGGACTTTTTTCTTCTGAGTGAAATGGGGGAGCCTTGTGCGGTTCTGGGCAGAGGAGTAATAGTTTTAAAAGGACCACTTTGAGTATGTCACTTTATTTGGCACTTAACTCTACGTAAACATTTATTTGTGTCTCTTTTTGCTGGAGAGACTTCTATAGGACTGTGACCTCCTTGAAGGCAGGGTTCATGTAATATTTATATTTCTCAGAAACTGGCATTGTAGGCACTCAGTGTTAGTTAAATTGAATAACAAAGGAGGGGACTCCCTCTGGCTGTTGGGTTGAAAGTAGACCGTAGAAGGTCCAGAGTGGAAGCAAGAAGACCAGATAGGCTATGGCAGTGATCCAGGCATGAGGTGATGGTGGCTCAGTGTGGAGAAGAGGGGGTGACAAGAAGAGGCTGGTGCGCTTCAGAGCATCATGACCAGATGTTGGAATGCACTTGCTGGGACAGCTCTAGTCAAATCGGTCCTCATGAACTGGCCCAGATGGGCAGCAGGTGTGTGTGGTGAGGGTTATTTAGTAGCCAGCCATCCTGAACTGCTCTTCTCAGATGTTTACTACTTATTCTTACCTTGGTGTGTTAACTGCTGTCATTTAGTTTCCTGTATCTACAAGGATGACAGGAGATATAAACAGATAGAGATGGGCTGGCTGAGGAGGTATTCCTGTATCAGGGAGGGAACAGGCAGATATATCGTTACAACCAGCTCCTCTGTCCCCTGAATCTTTGCTTTCCTTGAGTATCACCTGTTCACTGTGTCCTCTTATGTGGCCACCCTCAGGAAGTCCCACAACTGTCAAGGCAGGCAAGCCACTACCCTTATTGCCAGCCACCTCTCCAGGAGGAATGAGTAGGATTGAGGATAATTAACGAGAAATTAAATAGGCAGCTTTAGTAAATAACCCTATAAGTCATTATCAGTGGAGGGAATGTCTTTTGTATTATACTAAAAGTTTTCATGTTTTAGACAAAAAGCCACAGTGAGATTTCTTCCTAGAAATAACAATAGCCAGTTGTGGCACGGTTTGAGAAACCAGGATGTAACTTTTTTTTTTTTTTTTTTTATACTTTAAGCTTTAAGGTACATGTGCACAAAGTGCAGGTTAGTTACATATGTATACATGTGCCATGTTGGTGTGCTGCACCCATGAACTCGTCATTTAACATTAGGTATATCTCCAAATGCTATCCCTCCCCTCTCTCCCCACCCCACAACAGGCCTCCGTGTGTGATGTTCCCCTACCTGTGTCCATGTGTTCTCACTGTTCAGTTACAACCTATGAGTGACAACATGTGGTATTTGGTTTTTTGTCCTCGCAATAGTTTGCTGAGAATGATGGTTTCCAGCTTCATCCATGTCCCTACAAAGGACATGAACTCATCATTTTTTATGGTTGCATAGTATTCCATGGTGTATACATGCCACATTTTCTTAATCCAGTCTATCATTGTTGGACATTTGGCTTGGTTCCAAGTCTTTGCTGTTGTGAATAGTGCCGCAATAAACATACGTGTGCATGTGTCTTTATAGCAGCATGATTTATAATCCTTTGGGTATACACCTAGTAATGGGATTGCTGGGTCAAATGGTATTTCTGGTTCTAGATCCCTGAGGAATCGCGACACTGACTTCCACAATGGTTGAACTAGTTTACAGTCCCACCAACAGTGTAAAAGTGTTCCTATTTCTCCACATCCTCTCCAGCACCTGTTGTTTCCTGACTTTTTAATGATTGCCATTCTAACTGGTGTGAGATGGTATCTCATTGTAGTTTTGATTTGCATTTCTCTGATGGCCAGTGATGATGAGCATTTTTTCATGTGTCTTTTGGCTGCATAAATGTCTTCTTTTGAGAAGTGTCTGTTCATATCCTTTGCCCACTTTTTGATGGGGTTGTTTTTTTCTTGTAAATTTGTTAGAGTTCATTGTAGATTCTGGATATTAGCCCTTTGTCAGATGAGTAGATTGCAAAAATTTTCTCCCATTCTGTAGGTTGCCTGTTCACTCTGATGGTAGTTTCTTTTGCTGTGCAGAAGCTCTTTGGTTTAATTAGATCCCATTTGTCAATTTTGGCTTTGGTTGCCATTGCTTTTGGTGTTTTAGACATGAAGTCCTTGCCCATGCCTATGTCCTGAATGGTAATGCCTAGGTTTTCTTCTAGGGTTTTTATGGTTTTAGGTCTAACGTTTAAGTCTTTAATCCTTCTTGAATTAATTTTTGTATAAGGTGTAAGGAAGGGATCCAGTTTCAGCTTTCTACATATGGCTAGCCAGGTTTCCCAGCACCATTTATTAAATAGGGAATCCTTTCCCCATTGCTTGTTTTTGTCAGGTTTGTCAAAGATCAGATGGTTGTAGATATGCGGCATTATTTCTGAGGGCTCTGTGCTGTTCCATTGGTCTATTTCTCTGTTTTTGTACCAGTACCATGCTGTTTTGGTTACTGTAGCCTTGTAGTATAGTTTGAAGTCAGGTAGCGTGATGCCTCCAGCTTTGTTCTTTTGGCTTAGGATTGACTTGGCAATGCGGGCTCTTTTTTGGTTCCATATAAACTTTAAAGTAGTTTTTTCCAATTCTGTGAAGAAAGTCATTGGTAGCTTGATGGGGATGGCATTGAATCTATAAATTACCTTGAGCAGTATGGCCATTTTCACGATATTGATTTTTCCTACCCATGAGCATGGCATTCTCTCTCTGTCATCAGGCTGGAGTGCAGTGGCACAATCTCAGCTCACTGCAACCTCTGCCTCCTGGGTTCAAGTGATTCTTCTTCCTCAGCCTCCTGAGTAGCTGGGACTACAGGCACACGGCACCACACCCAGCTATTTTTTGTTGTATTTTTAGTAGAGACGGGGTTTCACCATGTTGGCCAGGATGGTCTCGATCTCTTGACCTCATGATCTGCCCGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGTGTGAGCCACCGCATCCAGCCTAGGATGTAACTTTTTAAGCTGCCAAAACTGCACACTGCAGTATGTACAGTCCTCCATGATCTAACTGACAGATCTAATTGACCTATTCTTTGTCCCCCAG
Seq C2 exon
CAACAGGTGTGCCCTGGGGCTATGAAGAGACCAAGACGCTCCTGGCTATTCTTAGTAGTTCTCAATTTTATGGAAAACTCCAGACCTGTCAGCAGAACAGCCAGATCTACAGGGCCATGGCGGAAGGACTCTGGGAGCAGGGTTTTCTGCGGACCCCAGAACAGTGTCGCACCAAGTTCAAAAGCCTACAGTTGAGTTACCGCAAAGTGAGGAGAGGCCGTGTGCCTGAGCCTTGTATCTTTTATGAGGAAATGAATGCTCTTTCAGGCTCCTGGGCCTCTGCACCTCCTATGGCAAGCGATGCTGTTCCTGGCCAAGAAGGAAGTGATATTGAGGCTGGAGAGCTGAATCACCAGAATGGGGAACCCACGGAGGTAGAAGATGGCACTGTGGATGGTGCAGACAGGGATGAAAAGGACTTCAGGAATCCTGGCCAGGAAGTCAGGAAACTAGACCTGCCAGTGCTGTTCCCAAACAGACTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000140987:ENST00000304926:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.096 A=NA C2=0.373
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=84.6)
A:
NA
C2:
PF138371=Myb_DNA-bind_4=WD(100=53.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains