MmuINT1035904 @ mm10
Intron Retention
Gene
ENSMUSG00000050619 | Zscan29
Description
zinc finger SCAN domains 29 [Source:MGI Symbol;Acc:MGI:2139317]
Coordinates
chr2:121163747-121166718:-
Coord C1 exon
chr2:121166044-121166718
Coord A exon
chr2:121164203-121166043
Coord C2 exon
chr2:121163747-121164202
Length
1841 bp
Sequences
Splice sites
5' ss Seq
GTGGTAAGA
5' ss Score
8.24
3' ss Seq
AAATCTCTCTTCTGGTGCAGGTG
3' ss Score
9.07
Exon sequences
Seq C1 exon
GATTTCCATTTCCTAAACCCAATGTGGTGTCCAGGTTGGATCAAGGAGAGCCATGGATCTCAGATCTGCTTAGCTCCAAGGAGAAGGATGTCCCAAAAGGCAACACAGGAACCAGTCTATTACCATCCAAGAGAGAGAGAACCTGCTGGGTGGAACAGGGTCACTGGGTATTTGATGATGAGAAGGTGGTGGGTGTGCACTGGGGCTACAAAGAGACTAGAACACTCCTTGCAATTCTCAGTCAGACTGAATTTTACGAAGCGCTCCGAAACTGTCACAGGAACAGCCAAGTGTATGGGGCTGTAGCTGGGAGGCTTCGTGAATATGGTTTCCTCCGGACTCTGGAACAGTGTCGGACCAAGTTCAAAGGCCTTCAGAAGAGCTACAGGAAGGTCAAGAGTGGTCATCCACCCGACACCTGCCCCTTCTTTGAAGAGATGGAAGCCCTGATGAGTGCCCAGGTCATTTCATTGCCCATTAATGGCCTGGAAGAGGCAGCCTCCCATTCTGCCCAGGCAGGCAGTGATGCTGAGACGGAGAAGCCAGGGCAGAGGGACTGGCAGCATGAAGATGGAGAGGAGGCTATAGCTGAAAGGTCAGACAGTGATGACCCGGAGGCAACCCCCCAGGACCCTGACAACCCACCTGCACCTGTCCTGTTCCGAAGCCCAAGTG
Seq A exon
GTAAGAAGCTTGTCTTGGGCTTTGGGATTAGGTTTGAGGAGCAATGAAACTGGATGTGGAACCACTTACCAGCTTGGTCATTTTAATAGGAAACAAGGTATTTCTCAACACTGCATTATATTCTCTTTTGTGAGCAAATCATGAGATAAAAGTAAGAGGATAGATTTTTTCTATCTCTTTTTAGTGCTTGGAATCAAACCTGGGACCTTACACCATGTAGTAAAACACTACACCCTTGAGCTACACCTCAAATTTCAGATATAACTTTTCAAAGAAATATACCCAAAATCCATTTTCTGTTTAGGAAATGAAAAAAACAAAAATCAAAACCCAGAAAAACCCCTCCATATCCCTCCCCCTTTTTAAAAGAGAATTTTTAAAATAAATAAATCATGGCTGAAAGAAAATGTTTTTCATTATCTTTGTTCTTATCTTTCCCTTCCTTTCTAGTTTTTTTCTGGTCTTTTGTTCTTCCCTGTTTTCCTTTCCTCCCAGTAAGTGAAAATAATGAAAAGAGGTGTTCTTAGATGGGAACTGTCTGAACCTTCCCTCTCTTTCCTTGGGAACCTTCAGGCAGGATATAACCATCCTCTGTTCCTTTGCTAAAAGCACTAAAGAGGGACCTGCAGTGGACATGTGTCAGGTTGAAGATACACTGGTCTTGCTTCTTTCCTCATTCTGGTCTCTGCAGTCCTTCCTCCTGCAGATCAAGTACATGAGTGTAGGACCCTTCAGGTCTTGGCTCTTGCTGGGGTTGCTTAATGGAGATAGTAACAGATGAAGACAAGCCATGATGGGAATTTGGCAGCAGTGTGATTCTGAAAGGGGCAGTTCCTTAGAATTTTAAGTCATTATTTTTTAAAATTATTTACAATTTTATGAATTTTACTTAAAAAAACTTGTAAATTAAAAACAAAATAACAATATCCCACCCAAACTAACCAGAACCAGTTTGACTATTGGTTCTGAAGCAGGGAGCTTCTTCCCATTGAAGTTTACACTTTTACTATCCAATACTGAATCATCCTATAGGAAACAGAAGGTAGGGATGACACATTGCGGGTCTTTTTTTTTTTTCCCCTGACAAATGGCTTTTCTAGTTGGGATCAGAACTGTAGAGAAATTAGTAAACAGGATGGGAGACGCACTGCGCACATGCACTTAGGTATCTACACGATTTGTTTTTCTTGTGACACAGTGCCTGATGAGAATAACTTAAGGAAGGTTTATGCTGGCTCACACTTGGAGTGTGTGCATCCTGCAGTGTTGAGAGCTGCTCTCAGTGTGGCAGTAGGAGTTGGAGGTAGCTGGTTATGCTGCTGCATCTGTAGTCAGAAAGCAGAGAAAGTGAAGCATGCTGGTGCTCAGCTTGCTTTCTTCTACCTTTTAATTCAGTCCAGTACCCTAGCCATGAGATGGTGCCACACAGTCAAGGGTGGGTCTTCCCTTAGGTAAACTTTTCTGGAAACACCCTCACAGACATGCCCACAGTATATCTAGTCAAGTTCACAGTGCATACTGACTGATCCAATGATCATGTAGAAAGACGACTTTTAAGTCACTAAATGGTACTAATAAAGTTCTCTGAAATCACTACAGGATACAGAAACAAAACTATAATTCATGTAGAGGTTTGTGATGAATCTAGGAACCTGAGCTTGGACGGCCTTCCTGTCTCTCCTTTGCTTATAAATTGAACCCCAGGCCTCTTGCATGTTTAAGGTACATTCTGAACTAGTGTCTCCAGCTAACTGGTTTTCCTAGAAGCCGGCAGTAAAACTGAAGAGTTGAGGCTCTAAAGCACTGGGTTAGGTGATGCTGAAATCTCTCTTCTGGTGCAG
Seq C2 exon
GTGTACACTGGGGCTATGAAGAAACCAAGACTTACCTTGCAATTCTCAGTGAGACTCAGTTCTACGAAGCCCTCCAAAACTGTCACCGCAACAGCCAGTTATATGGAACAGTTGCTGAGAGACTGTGGGAATATGGCTTCCTTAGAACCCCAGAGCAATGTCGTACCAAATTTAAAAGCCTACAAACCAGCTATCGGAAAGTCAAGAATGGCCAAGCACTAGAAACCTGCCCCTTCTTTGAAGAAATGGATGCTTTAGTGAGTGCCCAAGTTGCTGCCCCACCTAGTGATGACCAGGAGAAAGAAACAGTTTCTTGTTGCCTCCAGAGAACCAGTGAGGCTGAACCTGAGAAGCAAGATGAGGACACAGAAGAAGATTCAGATGATGAAGATGATACTGAAATACCTCCAGAGGCTGTTATAACCCGTGCCCCAGTCTTATTCCAGAGCCCCAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000050619:ENSMUST00000110661:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.355 A=NA C2=0.340
Domain overlap (PFAM):
C1:
PF138371=Myb_DNA-bind_4=WD(100=38.1),PF138371=Myb_DNA-bind_4=PU(0.1=0.0)
A:
NA
C2:
PF138371=Myb_DNA-bind_4=WD(100=56.2)
Main Inclusion Isoform:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAGCATGAAGATGGAGAGG
R:
GAAGGGGCAGGTTTCTAGTGC
Band lengths:
353-2194
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types