RnoINT0169498 @ rn6
Intron Retention
Gene
ENSRNOG00000012419 | Zscan29
Description
zinc finger SCAN domains 29 [Source:MGI Symbol;Acc:MGI:2139317]
Coordinates
chr3:113123899-113126811:-
Coord C1 exon
chr3:113126472-113126811
Coord A exon
chr3:113124352-113126471
Coord C2 exon
chr3:113123899-113124351
Length
2120 bp
Sequences
Splice sites
5' ss Seq
GTGGTAAGA
5' ss Score
8.24
3' ss Seq
AAATCTCTCTTCTGGTGCAGATG
3' ss Score
8.53
Exon sequences
Seq C1 exon
GTTTCCCTGGAACAGTGTCGGACCAAGTTTAAAGGCCTTCAGAAGAGCTACAGGAAGGTCAAGAGTGGTCATCCACCAGATACCTGCCCCTTCTTTGAAGAGATGGAAGCCCTGATGAGTGCCCAGGTCATTTCATTGCTCATTAATGGCCTAGAAGAGGCCACCTCCCATCCTGGCCAGGCAGGCAGTGACGCTGAGACTGAAGAGCCAGGGCAGAGGAACTGGCAGCATGAAGACGGAGAAGAGGCTATAGCTGAAAGGTCGGACAGTGATGACCTGGAGGCAACCCCTCAGGACCCTGACAGCCCACCTGCATCTGTCCTGTTCCGAAGCCCAAGTG
Seq A exon
GTAAGAAGCTTTTCTTGGGTTTTGGGATTAGGTTTGAGGAGCAATGAAACTGGATGTGGAACCAGCCATTGTCACTTGCCAGCTTGGCCATTTTAATAGGAAGCAAGGTGTTTCTCAACTCTGTATTGTTTTCTCTTCTGTGAACAAATCATGAGATAATAGGAAGAGGATAGATTCCTTTTTCTCTCTTTTTTAGTGCTTGGAATCAAACCTGGAGCCTTACACAATGTTAGGCAAACACTACACCATCGAGCTACATCTCAAATTTCAATTTTAATTTTTCAAAGAAATATATCCAAATAAAGTGTGTTCAAAGGGTTATTTTTTTTAAATTAAAATCCATTTTCCTGTTTAGGAAATGAAAAAAAAAGTTTCCCTCACCCTTTTAAAAGGGAATTTTAAGGGCTGGAGAGATGGCTCAGCGGTTAAGAGCACTGACTTCTCTTCCATAGGTCCTGAGTTCAACTCCCAGCAACCACATGGTGGCTCATGACCATCTGTAATGGAATCCGATTCCCTCTTCTGGTGTATGTGAAGACAGCTACAGTGTAACTCATACATAGAATAAAATAAATTTAAAAAAAATCTATTAAAAAAAGGGAATTTTAAAAATAAATAATGGCTGAAATAAAATGTTTTTCATTATCTTTGTTCTCTTTTCCTGCCTTCTAGTTTTCCTCTGGTCTTTTGCTTCTTCCATTTTCCTTTCCTTCCAGTAATTGGGAAATAATGAAAAGAGGACTTGTTAGATGGGAACTGTTTGAACCTTCCCTCTCTTTCCTCGATACCTTCAGGCAGTAGAGGATATAACCATCCTCTGTTCCTTTGCTAAAAGCACTAAAGAGAGAGCTGCAGTGAGCATATGTCAGGTTGAAGATACACTGTTCGTGCTTCTCTCCTCACTCTGGCCTCTGCAGTCCTCCATCCTGCAGATCAAGTACCTGACTGTAAGATCCTTCAGGTCTTTGCTCGTGCTGGGGTTGCTTAGTGGAGATAGTAACAGATGAAGACAAGCCATGCTGGTAATTTGGCAGCAGTGTGATTATGAAAGAGGCAGTTCCTTAGAATTTTAAGTTATTATTTTTAAAAATTATTTATAATTTTATGAATTTTACTTCAAAAACTTGTAAATTAAAAACAAAATAATAACAGTATCCCACCAAAACTAACCAGAACCAGTTTGACTATTGGCTCTGAAGCCATGGCGCGTCCCATTGGCGTTTACACTTTCACTATCCAATATTGAATGATTCTATAGGAAACAGAGAAGTTAGGGATGACACATTGAAGTCAACAGCAGCTGTGAATCCTTTTATCCCCTGGCAAGTGACTTTTCTAGTTGGGATCAGAATTCTTGAGAAATTCGTCAACAGGATGGGAGATACACTGTGCACATGTACTTTGTGTATCTATACTAGCTATTTTTCTTGTTGTGACACAATGCCTGAAGAGGATAATTTAAGGAAGGTTTATTTTGGTTTACAGTTGGAGTGTGTGCATCCTGCTGGGAAAGACAGTGTTGAGAGCTGTTCCCAGTGTGGGAGTAGGAGCTGGAAGTCGCTGGTTATGCTGCTGCATCTGTAGTCAGGAAGCAGAGGAAGTGATGCATGCCGGTGCTCAGCTTGCTTTCTTCTTCTACCTTTTAATTCAGTCTGGGACCCCAGCCCAGGAGATGGTGTCACACAGTCAGGGTGGGTCTTCCCTTAGTTAAACTTTTCTGGAACACCCTCACAGACATGCCCAGAGTATATCTAGTCAAGTTGATAATGAAGAATAACCATCACAGTGCATAATTACTGATCCAGTCCAGTGATCATGTAGAAAGGCTTCTTTTAAATCAGTAGATGGTACTAATAAAGTTCTCTGAAGTCACTAAAGGATACAGAAACAAAACAATCTACAGTTCATGTATAGGTTTGGGGATAAATCTAGGAACCTGAGCTTGGATGGCCTCCCTCTGTCTTTCCTTTGCTTATAAATTGAACCCCAGGCCTCTTAAGGTACACTCTGAACTAGTGTCTCCAGCTTAACTGGTTTTCCTAGAAGCTGGCAGTAAGACTAAAGAGTTGAAGCTCTAAAGTGCTGGGTTAGGTGATGCTGAAATCTCTCTTCTGGTGCAG
Seq C2 exon
ATGTACACTGGGGCCATGAAGAAACCAAGACTTACCTTGCAATTCTTAGCGAGACTCAGTTCTACGAAGCCCTCCAGAACTGTCACTTCAACAGCCATTTATATAGAGCAGTTGCTGAGAGATTGTGGGAATATGGCTTCCTTAGAACCCCAGAGCAATGTCGTACCAAATTTAAAAGCCTACAAACCAGCTATCGGAAAGTCAAGAATGGCCAAGCACCAGAAACCTGCCCCTTCTTTGAAGAAATGGATGCTTTGGTGAGTGCCCAAGTTGCTGCCCCACCTAGTAATGACCAGGACAAAGAAACAGCTTCTTGCTGCCTCCAGAGAACCAGTGAGGCTGAACCTGAGAAGCAAGATGATGACACAGAAGATTCAGATGATGAAGGTGATACTGAGATACCTCAAGGGGCTGTTACAACCCATGCCCCAGCCTTAGCCCACAATCCCAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012419:ENSRNOT00000035889:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.588 A=NA C2=0.461
Domain overlap (PFAM):
C1:
PF138371=Myb_DNA-bind_4=PD(45.1=32.5),PF138371=Myb_DNA-bind_4=PU(0.1=0.0)
A:
NA
C2:
PF138371=Myb_DNA-bind_4=WD(100=56.6)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]