HsaINT0188830 @ hg19
Intron Retention
Gene
ENSG00000140265 | ZSCAN29
Description
zinc finger and SCAN domain containing 29 [Source:HGNC Symbol;Acc:26673]
Coordinates
chr15:43656113-43659006:-
Coord C1 exon
chr15:43658308-43659006
Coord A exon
chr15:43656581-43658307
Coord C2 exon
chr15:43656113-43656580
Length
1727 bp
Sequences
Splice sites
5' ss Seq
GTGGTAAGA
5' ss Score
8.24
3' ss Seq
AATTTCTCTTCTGGTGGCAGGTG
3' ss Score
7.41
Exon sequences
Seq C1 exon
GATTGCCATTTCCTAAATCCGGTGTGGTCTCCAGGTTGGAGCAAGGAGAGCCATGGATCCCAGATCTGCTGGGCTCTAAGGAGAAAGAACTTCCAAGTGGCAGCCACATAGGAGACAGACGAGTGCATGCTGATCTGTTACCATCCAAGAAAGATAGAAGAAGCTGGGTGGAACAGGATCACTGGAGCTTTGAAGATGAGAAGGTGGCAGGTGTGCACTGGGGCTATGAAGAGACCAGAACGCTCCTCGCAATTCTCAGCCAGACTGAGTTTTATGAGGCTCTCAGAAACTGCCATAGGAACAGCCAAGTGTATGGGGCTGTGGCTGAGCGGCTCAGGGAATATGGCTTCCTCCGGACCCTGGAACAGTGTCGGACCAAGTTCAAAGGTCTCCAGAAGAGCTATCGGAAAGTCAAGAGCGGCCACCCACCTGAGACCTGCCCCTTCTTTGAAGAGATGGAAGCCCTGATGAGTGCTCAGGTCATTGCCCTGCCCAGTAATGGCCTGGAAGCAGCAGCCTCTCACTCTGGCCTGGTAGGCAGCGATGCTGAGACTGAAGAGCCAGGGCAGAGGGGCTGGCAGCATGAGGAGGGAGCAGAAGAGGCTGTGGCTCAGGAGTCTGACAGTGATGACATGGATCTAGAGGCGACCCCCCAGGACCCCAACTCAGCTGCACCTGTTGTGTTCAGAAGCCCAGGTG
Seq A exon
GTAAGAAGCTTTTCTTCTTGGAGTTTTGGAATTAGACTTGGGGAACAAAGAGACTGGATGTGGAGTCAGAAGGCTTAATGTCACATGCCAGCTTTGCCACTTAGGGAACAAAGAAGTGCTTCTCCATTCTTTGTGTGTATTTCATTCTCTTTTATGGGAAAATCAGTGAGATAATTGGGAATACATTTAGATTTTTAGAAGAAATACACTCAGAAAATTCACAGTCCTGAGAAGGAGTATCATTCCTTCCATTTCTTTACTAAACTATTTTTTTCCCTGATTTTAAAATCATTGCAGCAGGCTCACTGAGAAAAATGTGGCACAATATTATCTTTAAGTAGAACCAGTGTTTATTGAGTATGTCATATGAACTTGATGTTTTACATATTTTATCTTTTACTTCCCCAAAGCTCAAAGTCAGTTTATTATATTCGTTTTTACTTAGAATAGTACAGTGAAGAATTGTCCAAAGTTGGGGAAACATTTTTTTCTTTAAAAATTTTAAAATATATTTAAACAGAGACAGGGTCTTGCTGTGTTGCCCAGGCTGGTCTCACTGGGTTCAAGCAGTCCTCCCACCTCAGCCTTCTGAGTAGTTAGGACTACAGGTGTGAGCCACCACACTGAGCTGGGAAACATCTAAGTTTCCTCTGAGATTCATAGTATACATTGGCATTTTAACAGGATTGAGAAGTCCTACAGTGAGAAAGCTTGTTTAACACTCTATTTAAATATTCTTGCCTATGGAATCCTTTTTAAAGTATCATTTACTACCATTAATGTAATCGGTACAACTATGCTGTTATGGAAAGAGCACCAAAGTATGACTCAGGAGGCTTAGATTCTAATCCTGATGACCACTAATAAACTGGGCGACCTTGAGCAGTTATCTAACCATTCTAAGCTTCCATTTCCTCAAGTGTAAAATGGGGCAAAGCAGGAGGACTACATCGCTAAAGTTGCAGTTCCTTTGTGAGCAGTGGTCTTTTCCTTCTGTTTTTTGTGACATGCATGATCTTATTTTAGTTCTGTTCTAGCTTTCTGGTCTTTGTGTCTTCTGCTTTTTCGTTTCTCTTTATTTTTCTTGTTTTCTTCATTCTCTTTTTCCTTTTTTGTTGCAGACACAAATATATGTAGGTTAATTAAATGTGGCACATGTGCTCAATGTTATTTTCATTATCATTGTTCTTTCACTTTTTTTTTTTTTTTTTTTTTTTGAGACAGAGTCGCTTTGTTGTCCAGGCTGGAGTGCAGTGGTGTGATCTCATCTCACTGCAACCTCCACCTCCCCAGTTCAAGCGATTCTCGATTCTCATGCCTCAGCCTCCCAAGTAGCTGGGACTATAGGTGCACACCACCACGCCTGGCTAATTTTTCTGTGTTTTTAGTAGAGACAGGCTTTCACCATGTTGTCCAGGCTGGTCTCAAACTCCTGGCCCCAAGCGATCCACAGGGATTACAGGCATAAGCCACTGTGCCTGGCCAGCTTCTTTTTTATATGGCTAAACAGAATTTGTAAATAAAGGTCTCTGTGAAATTGCTAAAGGATATAAAGAAGCAAAACATTCTATACTGAGTTTGTGGATTTTGGAAACATGAAGTATTTTTACTTTTTCATCTAGGAGCCTGAGCTTAGGTGAATTCTCATGATGCAGATGATAGGACTGAGGAATTCAGGCTCTAAAGCTCTGGATTAAGTGGTGCTGAAATTTCTCTTCTGGTGGCAG
Seq C2 exon
GTGTACACTGGGGCTATGAAGAGACCAAGACTTACCTTGCAATTCTTAGTGAGACCCAGTTTTATGAAGCCCTCCGGAACTGTCACCGCAACAGCCAGCTGTATGGAGCAGTGGCTGAGAGGTTATGGGAATATGGCTTTCTTAGGACCCCAGAACAGTGTCGGACCAAGTTTAAAAGCCTGCAAACCAGCTATCGGAAAGTTAAGAATGGCCAGGCACCAGAGACCTGTCCCTTCTTTGAAGAGATGGATGCTTTGGTGAGTGTCCGGGTTGCTGCCCCACCCAATGATGGCCAGGAAGAGACTGCTTCTTGCCCCGTCCAGGGGACCAGTGAGGCTGAAGCTCAGAAGCAAGCTGAGGAAGCAGACGAGGCCACAGAGGAAGATTCTGATGATGATGAAGAGGATACTGAGATACCCCCAGGGGCTGTCATAACCCGTGCTCCAGTGTTATTCCAAAGCCCCCGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000140265-ZSCAN29:NM_152455:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.402 A=NA C2=0.366
Domain overlap (PFAM):
C1:
PF138371=Myb_DNA-bind_4=WD(100=36.8),PF138371=Myb_DNA-bind_4=PU(0.1=0.0)
A:
NA
C2:
PF138371=Myb_DNA-bind_4=WD(100=54.8),PF045208=Senescence_reg=WD(100=91.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTCACTCTGGCCTGGTAGG
R:
CTTGGTCCGACACTGTTCTGG
Band lengths:
352-2079
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)