BtaINT0166416 @ bosTau6
Intron Retention
Gene
ENSBTAG00000014478 | ZSCAN29
Description
zinc finger and SCAN domain containing 29 [Source:HGNC Symbol;Acc:HGNC:26673]
Coordinates
chr21:55633293-55636255:-
Coord C1 exon
chr21:55635560-55636255
Coord A exon
chr21:55633761-55635559
Coord C2 exon
chr21:55633293-55633760
Length
1799 bp
Sequences
Splice sites
5' ss Seq
GTGGTAAGC
5' ss Score
8.15
3' ss Seq
AACTTCTCTTCTGGTGGCAGGTG
3' ss Score
7.16
Exon sequences
Seq C1 exon
GATTTCCATGTTCTAAATCCAGCATGGTCTCCAGGTTGGAGCAAGGAGAGCCATGGATCCCAGATCTGGGCTCCAAGGAGAAGGAACTCCCAAGAGGCAGTCACACAGAAGACAGACGAATGCCTGCTGATCTGTTACCATCCAGGAGAGAGAGAAGCAGCTGGGTGGACCAGGATCACTGGGGCTTTGAGGATGAGAAGGTGGCAGGTGTGCACTGGGGCCATGAAGAGACCAGAACTCTCCTCGCAATTCTCAGTCAGCCTGAGTTTTATGAGGCTCTCCGAAACTGTCATCGAAACAGCCAAGTGTACGGGGCTGTGGCGGAGCGGCTCCGGGAGTTTGGGTTCCTCCGGACCCTGGAGCAGTGCAGGACCAAGTTCAAAGGTCTCCAGAAGAACTATCGGAAAGTCAAGAGTGGCCACCCACCTGAGACCTGTCCCTTTTTTGAAGAGATGGAAGCCCTGATGAGTGCCCAGGTCATTGCCCTGCCCAGTAACGGCCCGGAGGAGGCGACCTCTCACTCTGGCCTGGGAGGCAGTGATGCTGAGACCAAGGAGCCAGAGCAAGAGGGCTGGCACCATGAAGGGGGAGAGGAGGCCACGGCTGAAGAGTCCGACAGTGACGAAGTGGGCCAAGAGGCCACTCCCCGGGACCCTGACAGCTCCACCACACCTGTCCTTTTCCGTAGCCCAAGTG
Seq A exon
GTAAGCCTTTCTTCTTGGCATTTTAGGATTAGACGGAGGAATTATGAGGTTGGGTGTGGAGTTAGTAAACTTAATGTCACTTGCCAGCTTTGTCACTTAAGAGAATAGAGGTATTTCTCAGTTCTTTATGTATTTCCTTCTCTTGTGGGAAAACCAGTGAGTTAATAGTAAGTAAAGAAAAATATTAAATATTATAAAGAAATACACTCAAAATTCAAGTGAGTCCTGAAAAGGAGTACCATTCCTTCTGTTTCTTTCTTAAAATATATTTTCCTGATTATAAAATCACTGAAGGCTGAGAAAATCTTGGCAGTATAGTATCTTTAAGGAGAAACAGTTTATCTGTTGAGTGCCTTATATGAACTGGTGTTTTATTTTTATCCTCCAAACTCAAGTTTATTATGTGTTCCTTTTTACTTAAAAGAGCATAGTGAAGGACTGTCTAAAGTTGGGAAAACATTTTCTACGTTTCCTCTATGAGATCTGCATCACATATTGGCATTTTAACAGGACCTAGTTTTGCAGCAAGAAATCTTGTTTAACACTCTATTGAAATATTATTTGCCTATGGAACCATCTTTAAATATCACATTATTACTGATGTAATCTGTACAACTAAGCTGTTATGGGAAAAGCACCACATATGAAGCAGGAGGCTTTGTTTCTAATCCTGCCCACTCATCAGCCAGGGGAGCATTTCACAGTTTGTGTCCTCAACTGTAAGGTATGGACAGAGCTAACTCCAAAGCTGCAGTTCTACTGTGAACACTTATCTATTCCTTCCACGTTTTATTATGTGTTGTTACTTTTGCTCTGTTCTAGTCTTCTTGTCTTGTACTTTTTCCTTTAAAAAAAAAATAATTCTCTTTCCCTTTTTGTCAGTGGAATAAATTTAGGTAAATCACAAACATGGCCCTTGTCTTTTTCCACTGCTTTTTCTCTGTCTTCCAATTATTTCCCTATTGCTTCACTGGCAGAGAGTGGAGGATAATGGAAGCAATGTCATTGCCACCTGGCTCTCAAGTGGGAGGAAAGCTCTTGGAACCTCCCTTCCCTTTAGCTTGAGGGACCTTCAGGGAGCAGAGTCTCTTAGTCATCCTGATGAAGTTCTGCCCATGTTGGGGACCAGGAGGTGCTCAATGCTCTGCTTCCTTCCTCCTCCTGGCTCTGCCAGTCCTCTGCTACTAAGGAGAAGGTGCATGACCACAGGTTCTTATCTTGTACCCTTCAGGCCTTTGCTATTGTTGGGCTGGCTTTTTGAGACTGTGGCCAGGTGAAGAAGGGCCATAAAAGGGAGTGCATTAGGCAGCAGTATGAATCTGAAAAAGACTGTTCCTTGGGATTTTGAGACATTCTTTGGGAGACTTAATTTATAAGGAAGTAGGGCTGGTAGGAAAACATTGATCAGAGAATTTAAGGATGGCTCCTGGCTGACAGTGACTGACTGTAGGTCTTGTAACCAGTTATTTTCTAGTTAGGATCAGAACTCCAGAACTGCTAGAAGAATGGGGAAATGCCTTCTGTACACTTGCCTCAGTGTACATAATGATCACTACTGTGATCAGCTGAAAAGGCCTTTTAAATTGAATGTAGGAGTCAAGGTCTCTGTGAAACTGGTATGGACCAGAGAAGCAGGACATCCTGAGAGTCTGCATTGATTTGGAAACGTGAGGTGTTCTTGCCTTCTCACCTAGGAGCCCAAGCTTAGGCGACTTTTCATGGTGCAGATGCTAGGACTGAGGAATTGCGGCTATAAAGCCCTGCATTAAGTGGTGCTAAAACTTCTCTTCTGGTGGCAG
Seq C2 exon
GTGTGCACTGGGGCTATGAAGAGACAAAGACCTACCTTGGAATTCTTAGTGAGACTCAGTTTTACGAAGCCCTTCGGAACTGTCACCGCAACAGCCAGTTGTATGGAGCCGTGGCTGAGCGGTTATGGGAATATGGCTTCCTCAGGACACCGGAGCAGTGTCGGACCAAGTTTAAGAGCCTACAGACCAGCTATCGGAAAGTCAAGAATGGCCAAGCACCAGAGACCTGTCCCTTCTTTGAAGAGATGGACGCTTTGGTGAATGCCCGGGTGGCTGCCCGGCCCAGTGACGGCCAGGAAGAAGAGACAGCCTTATGCCCCATGCAGGAGACCAGTGAGGCTGAAGCTGAAAAGCAAGCCGAGCCGGCAGTCGAGGCCATAGAAGATGATTCTGAAGATGATGAAGAGGATCCCGAAATACCTCCAGAGGCACTGACCCGTGCTCCAGTCTTATTTCAGAGCCCCAGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014478:ENSBTAT00000019251:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.579 A=NA C2=0.471
Domain overlap (PFAM):
C1:
PF138371=Myb_DNA-bind_4=WD(100=36.9),PF138371=Myb_DNA-bind_4=PU(0.1=0.0)
A:
NA
C2:
PF138371=Myb_DNA-bind_4=WD(100=54.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCTGTCCTTTTCCGTAGCC
R:
ATGGGGCATAAGGCTGTCTCT
Band lengths:
349-2148
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]