RnoINT0169023 @ rn6
Intron Retention
Gene
ENSRNOG00000024245 | Zkscan2
Description
zinc finger with KRAB and SCAN domains 2 [Source:RGD Symbol;Acc:1359568]
Coordinates
chr1:193443883-193449389:-
Coord C1 exon
chr1:193448706-193449389
Coord A exon
chr1:193444375-193448705
Coord C2 exon
chr1:193443883-193444374
Length
4331 bp
Sequences
Splice sites
5' ss Seq
GTGGTAAGA
5' ss Score
8.24
3' ss Seq
GCTTTATCCTTGAATGGCAGGTG
3' ss Score
6.53
Exon sequences
Seq C1 exon
GAGACACTGTGTCTGCACCTAACAAAATAGCCCAGTTGGAACAAAAAAAGGAACCATGGACTGTAGGTCTACATTCCTCAAATAAGAGGACTAGTGTCCTGCAAAGCAAAATCAGCAAAGAGAAGTCAGTGCACGCTGTTCAGATCCCAGCAAGGAATGCAGGGAAAGTGTGGCGAGAGCAGCAACAGTGGGGTTTAGAAGATGAAAAAATTGCAGGTGTGCACTGGAGCTATGAAGAAACCAAGACTTTTCTTGCGATTCTCAAGGAATCTCGCTTTTATGAAACACTCCAGGCTTGTCCCCGAAATAGCCAGGTGTATGGTGCTGTGGCTGAATGGTTGCGAGAATGTGGCTTCCTCAGAACACCAGAGCAGTGCCGGACCAAGTTCAAAAGTCTTCAGAAGAGTTATCGAAAAGTGAGAAATGGTCACATGCTAGAACCCTGTGCCTTCTTTGAGGACATGGATGCCTTGCTAAATCCTGAAGCCCACACTTCGTCTACTGAGAGGCCAAAGGCCGTGATCTCTCTCCCACTAAAGAGAACTGCTGTTAGTGCTAAAGAGCAGGTCAGTTTGGTGGAGGAGGAGGAAGGTGCTGAAGACTCTGATGGCGATGAAGTGGGCATTGAGTTTGTACGCAAGTCTGAAATCCGTGCTGCCCCTATCTTGTTTCAAAACCTGAGTG
Seq A exon
GTAAGAATTGTACGGTTTTTTTCTTGGTATGAAGATAGAAGTGTACTCTTGAAGAAAAGCATTACATTAGACATCCTGGAGAAGGCTTGCACTCCACGCTGTTTCCCCAGTGATGCCCCACAACTGAAAGGGCATTTGGGTGTTTGCTGCTCTCCCCATTGTAGCCTGAGTGCAGCTCTCAGGAGCCTACAGGCTCTATTTCAGGTTAGAGTGGAGCATGGTTTTTAAACATTTGGGAGTCAGGGCAGAGAGGTGACTCGGTTGTTAAGAGCCCTGGCTGCTCTTAAAGAAGACCCAGGTTCAGTTCCTATCTTCTGCATGGCAGTTCCTAACCATCTGTCACTCCAGTTCCAGTGACTCCAACACCTCTGGCCTCTGGGAACATGCACCCATGCTACACATACACTGCTACAGACTTTCATACGCACATAAATAATCATATTCATTATAGTCCTTCCTTTAGAAGGGAAGTAAATGGAGCGAAAGAATTCTAAGTGCCTAGTATTACTTGAGGACTACTCCAGTCAGTTGCATTACAACAAATAAAGGATGCATTGTTTGTCCATACAGAATAGCCAATAACAAACAGTGTAAAGGAGTAGAGAAGATGAAACAAACTCTTTTCTGCCCAATTTAAAACAAGAAAGGAGGGTAAACAGAAGACAGAGCAGACAAGTCACTTAAAGCAATAGTAAGTGCCAGGCTGGGGGCGTACAACTGTAAAGCCAGAGATTGGAAAGCAGATGCATCAAGAGTTTGAAGGTAGCCTGGACTAAGAGCAGAGTCCCTTCTCCAAGTACATTACAGGAACAAGATGTCTTAATCACTTTCCTGACACTGTGAAGAGATACCATGACCAAAACAACTTATAGAAAGAGTTTATTGGGGCTCACAGTTCCAAATGGTCAGAATCCATGGCCAACATGACAGTGGACAAGACAGAGTTTACATCCTTATCAGCAAATAGAAGGCAGAGAGGTAGGGAGGAGAGAGAGGAAGAGGAAGGGGAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAATGCTAACTAAATAGGAAAATTTTGTACTTTTGAAACCTCAAAGCCTTCCCCAGTGGCATGCCTTCTCCAACAGCTTATGGGGGCCATTTTCATTCAAACCCCTACATCCTATTACCTGGACTCACAGGCTTGTTGTAAAATAATAAAATTAATTCACTCTAACTTCAAAAACCCCCATAATCTTTTAGTCTCAAGAGTGTTTGAAAATTTAAAGTCTCTTCTAAGAGTCAAGGCAGTCTCTTAATTGTATCTACCTGTAAAATAAAAAAGCAAATTACATACTTCCAACATAGAATAACATATCTATTAATGGGGGAAGAATGGGGCATAGTGAGGAAATACTAGACCAAAGCAAGACCAAAACCCAGCAGGGCAAGCTTCAAATCCTGTAGTCTGATGGCTCTTCTCTTCCAGCATTGCTGTTACACACTTCTCTCAGGCTGATCTCACTCCCTACGTCCCAAGGCTTGGGTGCCTCCAACATCCTAGTGTCTCCAATACAATCTGGGCTTCCCTTTCACATCTTCACCCTGGCCTCCATATAAGGACTACCCTGCCACATCCCTGTTCCCAGTGGTTTTGTCTTAACTGGCAAGGATGATTCCACAACCCCGTTACTCCTATATCCTTTGACTCTAAAGCCAGAATCCTGTGGCTGAAGTTGCCGGACACTGAAGTTTGGAGTGGTGGAGTCTGGCCCTCTCCTTGACTTACACGTACATAGGCTCTGGTTTGCTGCTTTCATTGTTTTAGGAGCAGCAGATTCCTTGCTGTTTCCTTTTATAAGTTGGAAACTTAACTGCACAGGATGCTGTCCTGAGGACACTACCCTTCATTTCATTTCCTTAAAGTTCTCATCTCTTTGAACACAAGACTTGGCTCCAGCATTCCTGGTGCTCTTTTTCTCCTCAAGTAGTACAATTTATTTCTTTTTGTCTACTTTTCCTTTTTCATCATAGTCCCCCATAAGAGTAATCACTAATAACCACATGATACATTCAGCTTTAGTCTGTCCTGGAATCTCCTCTGCCAGCAAATAGTCCAAAACTCACAGTTAGCCTCAGGCAGATTCTTAGGACAAGGGCAAAAAGCAGACATATTCCTTACCAAAATATCACCAGAATGCTTTCTACCCAATGGTCTCTAGCTAATAATTGTTCCCCTGGGAAACCTCCTCAGGTAAGCCTCCACAGTATACACAGCTCTCAACACTATTGTTCTCTATGTTCCTACTCGGTGGCCCATTAAGCCCCACTAAGAGCATTCAGCCACTTCCCTATCCAAAGAGTTGTACATTCCTCCAAAAGACCATCATGGACAAGCCTATCACATCAGTGTGTATTCCTGGTACTAACTCCTGTCTTAATTCCATTAACTGGGAACCAGGCATTCAAGTTATGAGCCTACAGGGACCATTCTCATTCAAGCCACCACACAAGTAAGATGGTAGAAATAAGTCTAAATATATCACTAATTACAAATTTACTAAACCAAGATTAACACATTTTAAAAAAAGACTACATATTCCTCATCATAGGACATGCATCTTAGATAAAAGACAGGGATTAAAATACAAGGAGACTAGGCCTGGTGCTGCAAACCTGAAAACCCAGCCCTTGGGACCTGGCAGGAGGACTGTGAAATTGAAACTAGTTTGAGCTACACATAAATATTTTTGAAAATATACTCTATGCAAATCTGTTGAATATTCGGGAACCAAAACACACAGAATTAAATAGCCAGTTAATAACTGACTGTAGATGTGTCATGTAACTACATTGGGCTTAATTTTCTCATGTGAAATATATGATTAAGAACTCACAAGGTTAGCTGGGCAGTGGTGACGCAGGCCTTTAATCCTCACACTCGGGAGGCAGAGGCTGGTGGGGCTCTGTGAGTTCAAGGCCAGTCTGGTCTACAGAATGAGCTCCAGGATAGCCAGGGCTACACAGAGAAACCATGTTTCAAAAGGCAAAAAAACAAACAAACAAACAAACACCTCACAGGGTTATTACTGGCTTGCAGTGGGATACAGGGGAAGGTCCTCTAAAAGGCTGAAATGAATCTCTGTTACTACTATTATTGTCTTTTCTAGTCCATTGTAATAGTGACAGTGAATCAATAGAATAGAAAACCAAAGCAGGCTAGGAAAGCTACAAGCATTCATGAGGCTATGTGCTGACAAATGGGAGGATAATCTTGCATATACAGATATTTACCAGTGTGAAAACACAAGGGGATCATCTCAAGTGTAGGAATCCAGGAATGAGGCTGGACACATTCAGTAAATATTGAGGCTAGCTACTACTTTTTCCAAAACACAAAAAACTACTTTTAAAAAACTACTGAGAAGAGTTTTATTCTGCTGGCTGTGCCATACAGATCATACACACACCCCTCTCCCTCTCCCTCTCCCTCTCCCCCTCCCTCTCCTTTAGTTAGCCTCCATAGCAGTGACAGTATTGGGAGACTACAGGGACTTTTCCAAGTAAACCCTTTTGGAATTTTGGCTAATTATTTAAAATTGATGTCTGTACAGGTTAACTCTTTGTATCCAGAAACACAGCACCTCGTATTTTCTAGTTATTTTAATGTGTTTAAATAAAGAATTATAGATTTTTAACATAGACTTCTCCGCTTTTTACAAAGCTTGTTTCTGGATATTCCTTGTTTCAAGTTGCTATCATGAGTAGAACTTTCATTCTTAATTTTCTTTATCCTTGAGACTTTGTAAATGTATACAGTGAAATATGATCATATAATATACACATGCCAGTTTGCTCCAACTCCTCCCCAAAAAAGTCCCCATTCCAACATCATGTATATTTTATCTGTTTGTTTACTAACCCACTAAGTACAGTTAGTGCTGCCCATATGTATATAGGTATGGGACCATCCTCTGAAGCGTGGGTAACCTACAAGTAGGAACTTCTTCAAAAAGAACAATTCTCTCTCTTCCAAAAGCTGTAAGTGCTAGAAGGGCCTGGAGAAAATGCACGCATGCATGCGCGAGCACACACACAAACACACACACACACACACACACACACACACACACACACACACACCTATGCTAGAATTTTGACTGACTGTGTAGGTCTTCTACAAATAACCATCCCTGCTGTGAGTTCATGAGTACAGTATCCTGTCATGTCCAGAAGACAGTGCTCCACAGGGCTCTTCCCTGAATAGGACTTGTATTATATTACACTGAATAATGTTGTAATAGAGAAGTTCCAGGCTCCTTTTCTTATATTTTTAAGCTTTATCCTTGAATGGCAG
Seq C2 exon
GTGTGCATTGGGGCTATGAAGAAACCAAGACCTTTCTTGATATCCTTCAAGAGACACGATTTTATGAAGCACTTCAAGCCTGTCATCGGAAGAGCAAATTGTATGGAGTTGTGGCTGAACAACTTCGAGAGTGTGGCTTTCTGCGAACACCAGAGCAATGCCGAACCAAGTTCAAAAGCCTCCAGAAGAGTTACCGAAAAGTGAAGAATGGCCATGTACTGGAGTCCTGTGCTTTTTACAAGGAGATGGATGCCCTGGTGAACTGCCGTACAGCTGCCCTTCCCACCAACACCTCAGAAGAAATCCCATCACTCTCAAGGCAAGAAAGGGGACATATTGAGGTTGAACCCCAAGAGCCTACAACCTGGGAACCTGAGGAGAGCTCACAGGAGGCGGTGTTAGAAGATTCTGGCAGTGAGAGAATGAGTGAGGAGGAAATTACAGAAGAGCCAGAATTCGAAGGATCTGCAGGCCTGCCGCAGAGCCCAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000024245:ENSRNOT00000020281:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.092 A=NA C2=0.424
Domain overlap (PFAM):
C1:
PF138371=Myb_DNA-bind_4=WD(100=37.6),PF138371=Myb_DNA-bind_4=PU(0.1=0.0)
A:
NA
C2:
PF138371=Myb_DNA-bind_4=WD(100=52.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]