BtaINT0164633 @ bosTau6
Intron Retention
Gene
ENSBTAG00000011162 | ZKSCAN2
Description
Bos taurus zinc finger with KRAB and SCAN domains 2 (ZKSCAN2), mRNA. [Source:RefSeq mRNA;Acc:NM_001205670]
Coordinates
chr25:23093749-23096719:-
Coord C1 exon
chr25:23096036-23096719
Coord A exon
chr25:23094241-23096035
Coord C2 exon
chr25:23093749-23094240
Length
1795 bp
Sequences
Splice sites
5' ss Seq
GTGGTAAGA
5' ss Score
8.24
3' ss Seq
ACTTTATCCTTGAATGGCAGGTG
3' ss Score
7.16
Exon sequences
Seq C1 exon
GAAGTACAGTGTCTGCAGCTAACAAGATAGCCCGGCTGGAGCCAAGAAAGGAGCCATGGACCATAAGTCTGCAGTCCTCTAATAAGAGGACTGTCCTGCAAAGCAACTACATCAAGGAAAAGTCAGTTCATGCTATTCAGATCCCTGCAAGGAATGCAGGGAAAACATGGAGAGAACAGCAGCAGTGGGGTCTGGAAGATGAAAAAATAGCAGGCGTGCATTGGAGTTATGAGGAAACTAAGACTTTTCTTGCAATTCTCAAAGAGTCTCGCTTTTATGAAACACTTCAGGCTTGTCCCCGAAACAGCCAGGTATATGGTGCTGTGGCTGAATGGTTACGAGAATGTGGCTTCCTCCGAACACCAGAACAGTGTCGGACCAAGTTCAAAAGTCTGCAGAAGAGTTACCGAAAAGTGAGAAACGGCCATGTGCTAGAACCCTGTGCCTTCTTTGAGGACATGGACGCTTTGTTGAATCCTTCCGCTCATGCTTCATCCATGGATAAGCCAAAGGAGATTCTGTCTCTCCCCAGACTGAAGAGAATTGGCATCAGTGCTAAAGAACAGATCAATTTGGTGGAGGAGGAAGAAGCTGCAGAGGAGTCTGATGGTGATGAAATGGGCATTGAGTTTATCCGGAAGCCTGAGCTTCATGGTGCCCCTGTCATATTTCAAAACCTGAGTG
Seq A exon
GTAAGAATGGCACTTTTATTCTGGTATGAGAATGGATGATGTGGTCTTATGGAAAAAGGATAAGACCCCCAGAAGTGACCAAACGCAGGGAGTTCTGACACACACACCTTGCCACTCATCACTGTGATTGGCCACATAACTGAAAGTGCTCCTAGGTGTTCGTTGCTGCCCCCAGTGCAGTCTGAGTAACAGCCATGAAGGATTCTTTTTCAGGTTAGAGCACAGCATGGATTTTGAGTATTTGGAGTCTGTGGAAGGAAAATAAATGGAGTCCAGGGGTACTAAGGATCTAACATTATCTGAGAATTGTTATAGTGCAGTCAGTTGTGTTAGATTATAAAAGTCAGGGACCCATTATCAAGGACAGCCAGTAAAAGAATGTGTCACCAACAAAAAAAGAATTGAAAAAAATGAAATTCTGAAAGAAGAAAGAGAAAAAGGAATACGAAGTAAATGCAACAAATGGAAAGAATAAAAACAGGATGGTAGATGTGTATCCACATGTCATTAATTATAAATTTAAAGGACAGGTTTTTCAGATATATTTTTAAAAACCTGTATTTACAAGAGATACATCTTTAATATAAAAACACAGAGACATTAAAATTAAAAGGATAGAAAAAGATATTATGCAAAAGAATGGTGTTGAAATTTGGGGACTGGGAAATGCAGAACTAAACCACCAGTTGACAATCATTGTATGACAGTTGACTTACCATATAACTACTTAGAACTCAATTTTCTGTCTTTAAAATACGGCTTAAATTATAAGCATAGTTGTTAGTGTTAAATGAAATAATATGGATGAAGGCATTCTGCAGATGCTAAAATGCAATAGAACATTGCCTGATGTCACAGTTATTAGTACCACCTTATGAAAAAAATGATAGTTTCTTAGATAGAACGGAAAAATAAACCAGACTAGAAGAGCTGAGACTGTAACCATTATTGTACGTATTCAAAAGAAACAAATCTCAGGAAAAAGATGGGAAAATGTATTACACATGTACAGGTAATCACCATTCTGGAGATCCATAAACATGAGGCTCAGACAGTTTCAAATTTGGGAATCCAGTGAGACTGAAGGGAACCAGTGAGGCAGAGGATAGAAAAGATTTCCTACTACAGATTACAACACCCCAAAAGCATGTTTAACTATATTCAAATATACTCTTAAAACTTTAATTCTGCTATAAAAGCAGGACATCTGCTTGTCTTATAGATCATTTCATCTCTTGAAGTAGAGGACTCAGTAACATCAAAAACTACTCTGGATATAGTTCTGCTCTTCAAAGAAGATGGGTTAAAGAGGTGATAGCAACTCTCATGCTGTTGGGTGTCTTAGTCCATTATTCCTAAAAATTTTTAAAAGGCAGGCAGCTGAGTCCTTAATAACCATAGCAATGGCAGATTTAGGGGCTGCATTTTTATTCTGCCAGATAAACTTTGAGATCAGTATATCAACTTTAAAATCCTTTTGGGTTTTTTTACTAAATAGATTCAAGAATTGATATCTGTACAGTTTGAGTCTTCCTACCCAGAAGTATAGTATCTCTCCATTCTTTCTAATTCTTTTATGTCTTTCAATATAATATTATAGAATTTTTATACAGATCCTCTCCTTTCTTGCAAACCTTATTCCAAGACATATCATTGTTCCAGGGAATGGGATTTGTTTTCCTGTACTTCTTAGATTTTGTAATGTATGAAGGCTACAGACAACTTATATCTTTGAACTTTACCCTTGAATGGCTGCAGACACCTTGTATCTTTGAACTTTATCCTTGAATGGCAG
Seq C2 exon
GTGTGCACTGGGGCTACGAGGAAACCAAGACTTTCCTTGACATACTCCATGAGACTCGGTTTTACGAAGCACTGCAAGCCTGTCATCGGAAGAGCAAGTTGTATGGGGCCGTGGCTGAGCAGTTGCGAGAGTGTGGCTTCCTCCGAACTCCGGAACAATGCCGGACCAAGTTCAAAAGCCTTCAGAAGAGCTACCGCAAAGTGAAAAATGGTCACGTGCTAGAGTCCTGCGCATTCTACAAGGAGATGGATGCTCTGATTAACTCTCGGGCATCTGCTGCTCCCACCAGCTCCCCAGAAGAAGCCCCGTCACCCTCAGTTCAAGAAAGAGAGGACATGGAAATTGAACCCCAGGAACCTACAGTCTGGGAACCTGAGGAGGACTCCCAGGAGGTGCTTGTTGAAGACTCTGGCAGTGAGAGAATGAGTGAGGAGGAAATCATGCAAGAACCAGAATTCCAGGGACCTCCATGTTTACTGCAAAGCCCAAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011162:ENSBTAT00000014826:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.052 A=NA C2=0.448
Domain overlap (PFAM):
C1:
PF138371=Myb_DNA-bind_4=WD(100=37.6),PF138371=Myb_DNA-bind_4=PU(0.1=0.0)
A:
NA
C2:
PF138371=Myb_DNA-bind_4=WD(100=52.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAGAAACGGCCATGTGCTA
R:
AGGCTTGCAGTGCTTCGTAAA
Band lengths:
352-2147
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]