MmuINT0180353 @ mm9
Intron Retention
Gene
ENSMUSG00000030757 | Zkscan2
Description
zinc finger with KRAB and SCAN domains 2 [Source:MGI Symbol;Acc:MGI:2444060]
Coordinates
chr7:130628454-130633776:-
Coord C1 exon
chr7:130633093-130633776
Coord A exon
chr7:130628946-130633092
Coord C2 exon
chr7:130628454-130628945
Length
4147 bp
Sequences
Splice sites
5' ss Seq
GTGGTAAGA
5' ss Score
8.24
3' ss Seq
ACTTTATCCTTGAATGGCAGGTG
3' ss Score
7.16
Exon sequences
Seq C1 exon
GAGACTCTGTGTCTGCACCTAACAAAATAGCCCAGTTGGAACAAAAAAAGGAACCATGGAGCGTAGGTCTTCATTCCTCAAACAAGAGGAATAGTGTCCTGCAAAGCAACTACATCAAAGAGAAGTCGGTCCATGCTGTTCAGATCCCAGCTAGGAATGCAGGGAAAGTGTGGCGAGAGCAGCAACAGTGGGGTTTGGAAGATGAAAAGATTGCAGGTGTGCACTGGAGCTATGAAGAAACCAAGACTTTTCTTGCAATTCTCAAGGAATCTCGCTTTTATGAAACACTCCAGGCTTGTCCCCGAAATAGCCAGGTATATGGTGCTGTGGCTGAATGGTTGCGAGAATGTGGCTTCCTCCGAACACCAGAGCAGTGCCGGACCAAGTTCAAAAGTCTTCAGAAGAGTTATCGAAAAGTGAGAAATGGCCACATGCTAGAACCCTGTGCCTTCTTTGAGGACATGGATGCCTTGTTAAACCCTGCAGCCCACACTTCATCTACTGAGAGGCCAAAGGTTGTGATCTCTCTCCCACTAAAGAGAACTGCTATTAGTGCTAAAGAGCAGGTCAGTTTGGTGGAGGAGGAGGAAGGTGCTGAAGACTCCGATGGTGATGAAGTGGGCATTGAGTTTATACGCAAGTCTGAAATCCGTGCTGCCCCTGTCTTATTTCAAAACCTAAGTG
Seq A exon
GTAAGAATTGTATTGTTCTCCCAACCCCACCCACAGGCTTGGTATGAAGATAGAAGTGTACTCTTGGGGGGAAAGCATTACATTAGACTAATCCTGGAAAGGGCTCTCATACTCCAGGCTGCTTTCAAAATGATGCCCCAAAAACTGAAAGGGCACTAGGGCGATTGCTGCTGTCCCCAGTGTAGCCTGAGTACAACTCTCAGGAGCCTTCAGGCTCTTTTTCAGGTTAGAGTGAAGCATGGTTTTTAAACATTTGGGAGTCGGGGTAGAGAGATGACTCAGTTGTTAAGAGCCCTGGCTGCTCTTACAGAAGATCCAAGCTCAGTTCCCAGCATCAACATGGGAGTTCATAACCATCTGTCACTCCAGTTCCAGTGATTCCAACACCTTCTGGCCTCTGGGTACCAGGCACACATACTATACATACATAGCTGCAGGCTTTCATATACACATATATAATAAATCATATTCATTATAGTCCTTCATATAGAAGGGAAGTAAGTGGAGCATAAGAGTTCCAAGTGTCGACTATTATTTAAGGATTACTAGAATCTGTTATATTATAATAAGTGAAGGAGGCATTATTAGTCCATACAGTATAGCCAATAACAAACAGTAGAAAGGAGTAGAGAAAATGAAACTTTTTTCTGCCCAATTTAAAATACAAGAAAGGAGAGTAAACAGAACAAAGAACAGTCACTTAAAAACAAAAGTAAGAGCCATGCCTGGTGGCATACAACCGTAAAGCCAAAAATTGGGAAGTAGAAACATCAAGAGTTTGAAGGTAACATGGACTAATAGCAGAACCCCTTCTCTAAATACACAAATACAGAAACTAGATGTCTTAGTTAACTTTTCTATTACACTGAAGAGATACCATGACCAAGACAACTTACAGAAAGTGTGTTGGGGTTCACAGTTCCAAAGGGTTAGAATCTATGGCCAACATGGCAGTGGATAAGCAGGCATGAAGCTGGAGCAGTAGCTGAGAGCTTATATCCTTATCAGCAAGTAGAAGGCAAAAGGAGGGAGGAAGGGAAGACAGGGGAGAGAGGGAAGATGGAGGGGGGAGGGGAATTGTGGGCTTCTGAAACCTCAGAACCTTCCCCAGTGAAATACCTTCTCCAACAAAGCCACACCCTTCCCAAACAGTTCCACCAACCAAGGACCAAGTACTTAAATATGAGAGCCTATGGGGGCCATTTTCATTCAATCCACTACACCCTACTCCTTGGCCCCCCACAGGCTTGTTGTAAAATAATAAAATTCATTTAGTCCAACTTTAAAAGTCACCATAATCTTTCAGTCTCAAGAGTGTTTAAAAGTTCATAGTCTCTTCTGAGAGTCAATGCAGTTTCTTAGTTGTAACTACCTGTAAAATAAAAAAAGAAAAAAGAAAATTACATACTTCCAACATAAAATAACACATCTTTAAAGGAGTAAATGGGGCATAGTGAGGAAATACTGGACCAAAAGAAGACCAAAACCCAGCAGGGCAAACTCCAAATCCTGTAGTTCTGTGTCTGATCTCAGAAGCCTTTGATGGCTCGTCTCTTCCAGCATTGCTAACTGTTACACACTTCTCTCAAGCTGATTTCACTTCCTACATGCAGCTCTCCTTGGCAAACATCCCAAGGCTTGGGTGCCTCCAACATCCTAGCGTCTCCAACACATTCTGGGCTTCACTTTCACAGCCTCACATTGGCCTTTCTGGACAATACAAGAACTACCCTGCCGCATGCCTGTCCCCAGTGGCTTTGCTTAACTGGCGAGGAAGTTCCCACAACCCCTTTACTCCTATATTCTTTATGACGAAAGCCAGAATCCTGTTGCTGAAGTTGCCAAGTACTGCAAGCTTGGAGTGAGTGAAGTCTGGCCCTCTCCTAGATTCGCATTTACATAAGCTCCGATTTGTCGCTTTCGTTTGTTTTAGAAACAGAAGACTCCTCGGCATTTCCTTTTTATAAGTTGGAAACTTAGCTGAATGGGATGCTATCCTGAGGACACGACTCATTTCATTTCACATCAGACACCGGTCTTTAAAGTTCTCATCTCTTTGAACACAAGATTTTTCTTCAGCATTCAATTTCCTGGTACTTTTTTTTCTCCTCAAATAGTACAACTTATATTTCTTTCTGCCTGCTTGTCCTTTTTCATCATAGTCCCACGTTAAAAGTAATCACTAATAAGCACATGATACATTCAGCATTAGTCTGTCCTGAAATCTCCTCTGCTAGCAAATAGTCCAAAACTTGAAGTTAGCCTCAGGCAGATTCTTAGGACAAGGTCAAAAAGCAGACACATTCCTTACCAAAATATCACCAGAATGCTTTCTACCCAACGGTCTCTAGCTAATAATTGTTCCCCTGGGAAACCTCTTAAGCTAAGCCTCCACAGTATGCATAGCTCTCACCACTGTTGTTCTCCATGTTCCTCCTCAATTGCCCATTAAGCCGCACTGAGAGCATTCAATCACTTCCCTATCCGAAGAGTTCCACACTCCCCCAAAGAACCATCGTGGTCAGGCCTGTCACATCAGTCCCTATTTCTGGTACCAACTTTTGTCTTAATACCACCAGCTGGGAAACAGGCCTTCAATGTGTGAGCCTGTAGGGACCAATCTCATTCAAACCACCACACGAGAGTAAGATAGTAGAGATAAATCTAAACATATCACTAATTACAAATTTACTAAACCAAGATTAACATACTTTTATAAAAAAAAGACTGCATATTCCTCATCATAGGAGATGCACCCCAGATAAAAGACAGGCATTAAAATGCAGAGAGACTAGGCCTGGTGCTGCAAACCTGTAAACCCAGCCCTCGGGACCTAGCAAGAGGACTGTGAGATTGAGACAAGCTTGACTGCACAGCAAGATCTTACCAAAAAATAGAATAGATATTCTATGCAAATCTGTTGAATATTTGGGAACCAAGACATACCGAATTAAACAGCCAATTAATAACTATGTGACTGTAGAAGCATCATGTAACTACATTGGGCTTAATTTTCTCATGTGAAATATATGATTAAGAATTCACAGGATTAGCTGGGCAATGGTGGCACATGCCTTTAATCCTGAGGCAGAGGCTGGTGGAGCTATGTGAGTTCAAAGCCAGCCTGGTGTACAGCATGAACTCCAGGACAGAGCTACACAGAGAAACCCTGTCTCAAAAATAATATATATATATCAAACCCATAGTTACTTGGACATAGCTCTCAGTCTCAAGGAAAACTGGTAAAAATAAGTAATAAGAATTTTCAGTCTATTCTTTTGGGGTTGTAGTCCATTTGTCTGAACTACTTGGGAAAGACACTTATAGGTAGCTAAGTCCTTTAGTTAGTTTCCATAGCAGTGGCAGTATGGGAGACTACATGGACTCTTCCAAGTCAACCCTTTTGGAATTGGAATTTTGGCTAATTATTTAAAAATTGGTGTTTGTGCAGGTTGAATCTTTGTACCCAGAAGCAGAACATCTAATTTTTTCAAGTTATTTTAATGTGTTTAAATAAATAACTGTAGATTTTTAACATAGATTTTTCTGCTTTTTACAAAGCTTGTTTCTGGATATTCCTTATTTCCTGTTGCTATCATGAATAGAACTTTTACTCATAATTTTTTTTATCCTTGAGAAGTTTGTAAATGTATACAATGAAATATTATCATATACACTCACCAATTACCTCCAACTCCCCGAAACAAGTCCCCATCCCAACTTCATGTGTTTTTTATCTATTTGTTTGTTTACTAACCCACTAAATACAATTAGTGCTGCCCATATGTGTATGGATATGGGACCATCCCCTGAAGCATAGGTAATCTACCAGTAGGAACTTCCTCAAAAAAGAACAATTCTCTCTCTTCCAAAAACTGTCAAGTGGTAGGGACTTGAGAACACGCACACACACATGCTCTCACACACACCTATGCTACAATTTTGACTGACTGTGTAGGTCTTCTTCTACAAATAGCCATCCCTGCTGTGAGTTCATGAGTGCAGTAGCCTGTCATGTCCAGAAGACAGTGTTCCACAGTGCTATTCCCTGAATAAGACTTGTATTCTATTACACTATAGAATGTGTGTAATAGAAAAGTTCCAGACTGCTTTTTTTATATTTTTAAACTTTATCCTTGAATGGCAG
Seq C2 exon
GTGTGCATTGGGGCTATGAAGAAACCAAGACTTTTCTTGATATCCTTCAAGAGACCCGATTTTATGAAGCACTTCAAGCCTGCCATCGGAAGAGCAAATTGTATGGAGTCGTGGCTGAACAACTTCGAGAATGTGGCTTTCTCCGGACACCAGAGCAATGCCGAACCAAGTTCAAAAGCCTTCAGAAGAGTTACCGAAAAGTGAAGAATGGCCATGTACTGGAGTCCTGTGCATTTTACAAGGAGATGGATGCCCTGGTTAACTGCCGTCCATCCTCCCTTTCCACCAACACCTCAGAAGAAGTCCCATCCCTCTCAAGGCAGGAAAGGGGACATATTGAGGTTGAACCCCGAGAGCCTACAACCTGGGAACCTGTGGAGACCCCACAGGAAGCAGTGTTAGAAGATTCTGGCAGTGAGAGACTGAGTGAGGAGGAAATGATAGAAGAGCCAGAACTTGAAGGACCTTCAGGCCTGCTGCAAAGCCCAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030757-Zkscan2:NM_001081329:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.085 A=NA C2=0.421
Domain overlap (PFAM):
C1:
PF138371=Myb_DNA-bind_4=WD(100=37.6),PF138371=Myb_DNA-bind_4=PU(0.1=0.0)
A:
NA
C2:
PF138371=Myb_DNA-bind_4=WD(100=52.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: