HsaINT0185864 @ hg19
Intron Retention
Gene
ENSG00000155592 | ZKSCAN2
Description
zinc finger with KRAB and SCAN domains 2 [Source:HGNC Symbol;Acc:25677]
Coordinates
chr16:25255106-25258711:-
Coord C1 exon
chr16:25258028-25258711
Coord A exon
chr16:25255598-25258027
Coord C2 exon
chr16:25255106-25255597
Length
2430 bp
Sequences
Splice sites
5' ss Seq
GTGGTAAGA
5' ss Score
8.24
3' ss Seq
ACTTTATCCCCAAATGGCAGGCG
3' ss Score
4.1
Exon sequences
Seq C1 exon
GAAGTGCAGTGTCTACATCTAACAAGATAACCCGGTTGGAACAGAGAAAGGAGCCATGGACTCTAGGTCTGCATTCCTCTAACAAGAGAAGTATCCTACGAAGCAACTACGTCAAGGAAAAGTCAGTTCATGCTATTCAGGTCCCTGCAAGGAGTGCAGGAAAAACATGGAGAGAGCAGCAGCAGTGGGGTTTAGAAGATGAAAAGATAGCAGGTGTGCATTGGAGCTATGAGGAAACAAAGACTTTCCTGGCAATTCTCAAAGAGTCTCGCTTTTATGAAACACTTCAGGCCTGTCCCCGAAATAGCCAAGTGTATGGTGCTGTGGCTGAATGGTTGCGAGAATGTGGCTTCCTTAGAACCCCAGAACAGTGTCGAACCAAGTTCAAAAGTCTCCAGAAAAGCTATCGAAAGGTGAGAAATGGCCACATGCTAGAACCCTGCGCCTTCTTTGAGGACATGGATGCTTTGTTGAACCCTGCAGCCCGTGCTCCGTCCACTGATAAACCAAAGGAGATGATACCTGTCCCCAGACTGAAGAGAATTGCCATCAGTGCTAAGGAACACATCAGCTTGGTGGAGGAGGAGGAAGCTGCAGAAGATTCTGATGATGATGAAATAGGCATCGAATTTATCCGCAAGTCTGAAATCCATGGTGCCCCTGTCTTGTTTCAGAATCTCAGTG
Seq A exon
GTAAGAATTGTGCTTTGTTTCTCTGGTAGGAAAACAGATGTGTGATCTTGTGGAAAAAGGAGTAGACCAGAAGTGGCCAAACCCGGGGGGTGCTGTCACACACACCTCACCACTTTCACTGTGGTGTGGCCACATCACTGAAGTACTCTCAGGTGCTTGCTGCTGCCCCCATTGCAGTCAGAGTAACAGCTCCAAGTGGCCGTGGAGAAGTCGTTTTCACTTTAGAGCACAGCATGGATTTTGAGTGTTTGGGTCCTTGTGGAAGGAAGACAAATGGAGTTACAGGGTTCTAAGGATCTTGTATTATCTGATAATTGGCATAAAGCAATCAATTGTATTGCATTATAAGTCAAGCATGCATTATTACGTTATCTAAAATAACCAGTACAAAATTTTGTAACAGTTTCAACAGGTTTTCATTAAAAATAAAATAAACATTTTTTGTGTAATCTAAAAGAAGACAAAGGAGAGAAAAAAGAATACAAAATAGATGAGTCAGATGGAAAAAAATAAGATATAAATCCAAATATATAATTAATTACAAACTTAAAGAACTAAGATTATCAGACATTAATTGCTTATAAGAGATCCACCTTAAATATAATACAGAGACATTAAAATTAAAAAGGCAGACAGATACACCATGCAAAAGAGAGCTGGTGTTAAATATTTTGTGACTGAGACATGCAGAATTAAATCGCCAATTAATAACTGTGTGACAGTAGACACATCACGTAACTACTTTGAGCTTCAATTTTCTCATCCGTAAAATATGGCTAAGAATACCTCATAGGGTTGTTATTAGTGTTAAATAGGATAATATAAATGAAGGCACTGTGAAAATGCTAAAATATAATACAGCATTGCCTGGTATCACTGTTATTAGTAATGTTTCTTTACTCCAGCTAGAGATAAATTCTTTTTTTTTTTTTTTTCCGAGACGGTGTCTCACTCTGTCACCCAGGCTGGAGTGCAGTGGCGCAATCTCGGCTCACTGCAACCTCCTCCTCCTGGGTGAGTTCAAGCAATTCTCCTGCCTCAGCCTCCTAAGTAGCTGGGATTACAGGCACCCACCACCACGCCTGGCTAATTTTTATATTTTTAGTAGAGACAGGGTTTCACCATGTTGGTCAGGCTGGTCTCAAACTCCCAACCTCAAATGATCCACCCACCTCGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACCGCACCCAGCCTATAAATTCTTACATAGAATGGAAAACTAAATCAGGCTAGGGAATGTATCCATGACTAAACCCATTCAAAAGAAATATCTGGCTGGATGTGGTGGTTCATACCTGTAATTCTAGCACTTTAGGAGACTGAGATGGGAGGATCCCTTGAGGCCAGGAGTTTGAGAGCAGCTGGGCAACACAGCGAGACTCCGTCTTTACAAAAAATAAAACAATTAGCCAGGCATGGTGGCACACTCCTGTAGTCCCAGCTACTCAGGAGGCTGAAGCGAGAGGGTCGCTTGAGCCCTGGAGTTCAAGGCTTCAGTGAGCCATGATTGTGCCACTGCAGTCCAGCCTGGGCAACAGACTGAGATTCTGTCTCAAAAAATAAAAAATAAACATCTGCTAAGATGGGAAGATGCATTATGCCTAGACAGGTCTCACCAATCTGAAAATCCATCAACATGAGGCTGGGACTCTTGGGGTGGTCTCAAATATGGGAATCCAGTCATAGGCCTGGAAGAAACCACCTAGTAAGATAGAGGATAGAGATTTTTCCTACAATAGATTACAAAACATACAAAAAGCATGTTTTACAAATTATATTTAGATATGCCCTGAAAAGTTTTATTCTGCTATAAATGCAGAACATAGTCTTGTCTTACAGATCATTTCATCTCAAAGTAGAGGATTCAATGACATCCAAAAACTACTCTGAACATAGTTCTGCTCCTCAAGGAAGACTGCTTACAGAAGTGGTAGGAAATTTGAGGGGGAAAGTTCCTATTGGAAATTCTAGTCATTATTCTTAACCACTTTGGAAAGAGACTTCTAGAGAACTAAATCATTTAGTTAATCACCATAGCAATGGCAGATTTGGGGGACTGCATTTTTATTCTTCCAAATAAGCTTTGAGATTAGTTTACCGATTTCAGTTTTAAAAATCTGAATGGGATTTTGACTATAGATTCATATGAGAAATGATATCTGTACACCTTGAGTCTTCCTATTCATAAACAGTGTCTTGTCATTTTTTCTAGTTTTATGATATTACACATTTTGATATAGACCTTCTCATTTCTTGCAAAGCTTATTCCTAGGCATATGTAGTTCTTGTTGCCACTGTGAATGGGATTTTTTTTTACCTCTACATTTCTTAATGTATATAGTATAGAGGCTAGAGACTCCTTTTCTTTGTTACATTGTGAACTTTATCCCCAAATGGCAG
Seq C2 exon
GCGTGCACTGGGGCTATGAAGAAACCAAGACTTTTCTTGATATCCTCCGTGAGACTCGGTTTTATGAAGCGCTTCAAGCCTGTCATCGGAAGAGCAAATTGTATGGGGCTGTAGCTGAACAGCTTCGAGAGTGCGGCTTCCTCCGGACACCAGAACAGTGCCGAACCAAGTTCAAAAGCCTTCAGAAGAGTTACCGCAAGGTGAAAAATGGCCACGTGCTAGAGTCCTGCGCGTTCTACAAGGAGATGGATGCCCTGATTAACTCTCGGGCATCTGCTCCTTCCCCCAGCACCCCAGAGGAAGTCCCATCACCTTCAAGGCAAGAAAGAGGGGGTATTGAGGTTGAACCCCAGGAACCTACAGGCTGGGAACCTGAAGAGACCTCACAGGAGGCAGTAATAGAAGACTCTTGCAGTGAGAGAATGAGCGAGGAGGAAATTGTGCAAGAGCCAGAGTTCCAGGGACCTCCAGGTCTACTGCAGAGCCCAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000155592-ZKSCAN2:NM_001012981:5
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.070 A=NA C2=0.467
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0),PF138371=Myb_DNA-bind_4=WD(100=37.6),PF138371=Myb_DNA-bind_4=PU(0.1=0.0)
A:
NA
C2:
PF138371=Myb_DNA-bind_4=WD(100=52.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)