HsaEX0073675 @ hg38
Exon Skipping
Gene
ENSG00000140987 | ZSCAN32
Description
zinc finger and SCAN domain containing 32 [Source:HGNC Symbol;Acc:HGNC:20812]
Coordinates
chr16:3384459-3390517:-
Coord C1 exon
chr16:3390423-3390517
Coord A exon
chr16:3390010-3390133
Coord C2 exon
chr16:3384459-3384941
Length
124 bp
Sequences
Splice sites
3' ss Seq
CAGCTCCAGTGTTGTTACAGGGA
3' ss Score
2.17
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
Exon sequences
Seq C1 exon
CCTGGCTTGCTCCTCAGGCTCCCAGGAACCTGCCTCAAAACACAGGTCTCCACGACCAGGAGACAGGTGCTGTGGTCTGGACAGCTGGGTCCCAG
Seq A exon
GGACCAGCCATGCGTGACAACAGAGCTGTATCCCTCTGTCAGCAAGAATGGATGTGCCCAGGCCCTGCACAAAGGGCCCTCTACAGGGGTGCCACCCAGAGGAAGGACAGTCACGTCTCGCTGG
Seq C2 exon
CAACAGGTGTGCCCTGGGGCTATGAAGAGACCAAGACGCTCCTGGCTATTCTTAGTAGTTCTCAATTTTATGGAAAACTCCAGACCTGTCAGCAGAACAGCCAGATCTACAGGGCCATGGCGGAAGGACTCTGGGAGCAGGGTTTTCTGCGGACCCCAGAACAGTGTCGCACCAAGTTCAAAAGCCTACAGTTGAGTTACCGCAAAGTGAGGAGAGGCCGTGTGCCTGAGCCTTGTATCTTTTATGAGGAAATGAATGCTCTTTCAGGCTCCTGGGCCTCTGCACCTCCTATGGCAAGCGATGCTGTTCCTGGCCAAGAAGGAAGTGATATTGAGGCTGGAGAGCTGAATCACCAGAATGGGGAACCCACGGAGGTAGAAGATGGCACTGTGGATGGTGCAGACAGGGATGAAAAGGACTTCAGGAATCCTGGCCAGGAAGTCAGGAAACTAGACCTGCCAGTGCTGTTCCCAAACAGACTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000140987_MULTIEX1-6/6=5-C2
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.800 A=0.228 C2=0.373
Domain overlap (PFAM):
C1:
PF0202312=SCAN=PD(2.1=6.2)
A:
PF0135222=KRAB=WD(100=78.6)
C2:
PF138371=Myb_DNA-bind_4=WD(100=53.1)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTGCCTCAAAACACAGGTC
R:
AGGCTTTTGAACTTGGTGCGA
Band lengths:
255-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development