HsaEX0073766 @ hg19
Exon Skipping
Gene
ENSG00000198464 | ZNF480
Description
zinc finger protein 480 [Source:HGNC Symbol;Acc:23305]
Coordinates
chr19:52803647-52819215:+
Coord C1 exon
chr19:52803647-52803737
Coord A exon
chr19:52817406-52817532
Coord C2 exon
chr19:52819087-52819215
Length
127 bp
Sequences
Splice sites
3' ss Seq
AAATGTGGTTTTCATTTTAGGGA
3' ss Score
9.04
5' ss Seq
TGGGTGAGG
5' ss Score
6.74
Exon sequences
Seq C1 exon
GATTGACTTCTAAAGAGTCATGCTGTGTGATGAAAAAGCCCAGAAGAGAAGGAAGAGGAAAGCAAAGGAGTCAGGGATGGCTCTTCCTCAG
Seq A exon
GGACACTTAACATTCAGGGACGTGGCCATAGAATTCTCTCAGGCGGAGTGGAAATGCCTGGACCCTGCACAGAGGGCTTTATACAAGGATGTGATGTTGGAGAACTACAGGAACCTGGTCTCCCTGG
Seq C2 exon
GAATCTCTCTTCCTGACCTGAATATTAACTCCATGTTGGAGCAAAGGAGGGAGCCCTGGTCTGGTGAGAGTGAAGTGAAAATAGCAAAAAATTCAGATGGGAGGGAGTGCATCAAAGGTGTGAACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198464_MULTIEX1-2/3=1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.474 A=0.000 C2=0.155
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=95.3)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGACTTCTAAAGAGTCATGCTGTGT
R:
CTGTGTTCACACCTTTGATGCAC
Band lengths:
218-345
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)