HsaEX0073907 @ hg19
Exon Skipping
Gene
ENSG00000198131 | ZNF544
Description
zinc finger protein 544 [Source:HGNC Symbol;Acc:16759]
Coordinates
chr19:58758112-58775010:+
Coord C1 exon
chr19:58758112-58758160
Coord A exon
chr19:58770644-58770896
Coord C2 exon
chr19:58772217-58775010
Length
253 bp
Sequences
Splice sites
3' ss Seq
AAGTTTTTCTCTGTTTGCAGCCT
3' ss Score
7.76
5' ss Seq
AAGGTGTTG
5' ss Score
1.36
Exon sequences
Seq C1 exon
CTGGAGCAAGAAGAGGACCTGTGCAGGGCAGAGCAGGAGGCCCCCCGAG
Seq A exon
CCTGAAGAAATGGTAGAATTGGTGCATTAAGAATATGAAGTCAGTGTTGATGTCTGAGATGCAATTATGAGATCCAGAAGTGGAACAGAAACTGATATTCTAGGACTAAGCACCAGTTAGGAGTCTGTGTTTGCTTCCTGTGGCTGCTGTAAAAAATTTCCACCAACCTGTTGGCTTAAAACAATGCAAATTTATTCTCTAAAAGTTCTGGAGGCCACAAGTCCAAAATCAATGTCACTGGATCAAAATCAAG
Seq C2 exon
ACTGGAAAGCTACCCTTGAGGAGAATAGGTTGAATTCTGAAAAAGATCGAGCTAGGGAAGAACTATCCCACCACGTGGAAGTGTACAGGAGTGGACCGGAGGAGCCACCCTCTTTGGTATTAGGAAAAGTGCAAGATCAGAGCAACCAGTTAAGGGAACACCAGGAGAACTCCTTGAGGTTCATGGTACTCACCTCAGAGAGACTGTTTGCTCAAAGGGAACATTGTGAGCTTGAACTTGGGGGAGGTTATTCTCTACCTTCTACTTTAAGCCTTCTACCTACAACATTACCTACAAGTACAGGTTTCCCTAAGCCCAACTCACAAGTTAAAGAGTTGAAACAAAATTCAGCTTTCATTAATCATGAGAAAAATGGAGCAGATGGGAAGCACTGTGAGAGTCATCAGTGTGCTAGAGCTTTCTGTCAGAGTATTTACTTGAGTAAACTTGGAAACGTTGAAACAGGAAAGAAAAACCCTTATGAATATATTGTCAGTGGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198131-'11-14,'11-13,13-14
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.316 A=0.000 C2=0.137
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NO
C2:
PF0135222=KRAB=PD(0.1=0.0),PF134651=zf-H2C2_2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=4.1)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCAAGAAGAGGACCTGTGC
R:
CTCCCCCAAGTTCAAGCTCAC
Band lengths:
292-545
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)