HsaEX0073956 @ hg19
Exon Skipping
Gene
ENSG00000198453 | ZNF568
Description
zinc finger protein 568 [Source:HGNC Symbol;Acc:25392]
Coordinates
chr19:37465322-37482201:+
Coord C1 exon
chr19:37465322-37465368
Coord A exon
chr19:37467229-37467269
Coord C2 exon
chr19:37482078-37482201
Length
41 bp
Sequences
Splice sites
3' ss Seq
TAGTTGGACTTTCTTTACAGATG
3' ss Score
6.49
5' ss Seq
CAGGTATGA
5' ss Score
9.46
Exon sequences
Seq C1 exon
AACCCAGAAGAGGAGAGAACTGCTGTGCGTCTGAAGTGATGGCGGAG
Seq A exon
ATGTGATCTTGTTTAATCCACATAACAACCCTATTAGACAG
Seq C2 exon
GGCTTGAAGTTCAAAGATGTGGTCATTTACTTCTCTCAAAAGGAGTGGGAATGCTTGCACTCTGCTCAGAAGGATTTGTACCGAGATGTAATGTTGGAAAATTACGGCAACCTGGTCTTACTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198453-'14-14,'14-12,15-14
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion (Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.030 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0301610=Exostosin=FE(9.5=100)
A:
NO
C2:
PF0135222=KRAB=WD(100=97.6)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCTGTGCGTCTGAAGTGAT
R:
ACCAGGTTGCCGTAATTTTCCA
Band lengths:
144-185
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)