HsaEX0073956 @ hg38
Exon Skipping
Gene
ENSG00000198453 | ZNF568
Description
zinc finger protein 568 [Source:HGNC Symbol;Acc:HGNC:25392]
Coordinates
chr19:36974420-36991299:+
Coord C1 exon
chr19:36974420-36974466
Coord A exon
chr19:36976327-36976367
Coord C2 exon
chr19:36991176-36991299
Length
41 bp
Sequences
Splice sites
3' ss Seq
TAGTTGGACTTTCTTTACAGATG
3' ss Score
6.49
5' ss Seq
CAGGTATGA
5' ss Score
9.46
Exon sequences
Seq C1 exon
AACCCAGAAGAGGAGAGAACTGCTGTGCGTCTGAAGTGATGGCGGAG
Seq A exon
ATGTGATCTTGTTTAATCCACATAACAACCCTATTAGACAG
Seq C2 exon
GGCTTGAAGTTCAAAGATGTGGTCATTTACTTCTCTCAAAAGGAGTGGGAATGCTTGCACTCTGCTCAGAAGGATTTGTACCGAGATGTAATGTTGGAAAATTACGGCAACCTGGTCTTACTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198453-'30-36,'30-31,34-36=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.019 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=97.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCTGTGCGTCTGAAGTGAT
R:
ACCAGGTTGCCGTAATTTTCCA
Band lengths:
144-185
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development