HsaEX0073961 @ hg38
Exon Skipping
Gene
ENSG00000198453 | ZNF568
Description
zinc finger protein 568 [Source:HGNC Symbol;Acc:HGNC:25392]
Coordinates
chr19:36974420-36991846:+
Coord C1 exon
chr19:36974420-36974466
Coord A exon
chr19:36991176-36991299
Coord C2 exon
chr19:36991751-36991846
Length
124 bp
Sequences
Splice sites
3' ss Seq
GTATTTATTTTTGGTTTCAGGGC
3' ss Score
9.79
5' ss Seq
TGGGTAACT
5' ss Score
4.34
Exon sequences
Seq C1 exon
AACCCAGAAGAGGAGAGAACTGCTGTGCGTCTGAAGTGATGGCGGAG
Seq A exon
GGCTTGAAGTTCAAAGATGTGGTCATTTACTTCTCTCAAAAGGAGTGGGAATGCTTGCACTCTGCTCAGAAGGATTTGTACCGAGATGTAATGTTGGAAAATTACGGCAACCTGGTCTTACTGG
Seq C2 exon
GGCTTTCTGATACTAAGCCAAATGTGATCTCCTTATTGGAGCAGAAGAAAGAGCCCTGGATGGTTAAGAGGAAGGAGACAAAAGAATGGTGTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198453-'30-38,'30-36,42-38=AN
Average complexity
A_C1
Mappability confidence:
94%=93=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.019 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=97.6)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAGAAGAGGAGAGAACTGC
R:
TGGACACCATTCTTTTGTCTCCT
Band lengths:
140-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development