MmuEX6009690 @ mm9
Exon Skipping
Gene
ENSMUSG00000074221 | Zfp568
Description
zinc finger protein 568 [Source:MGI Symbol;Acc:MGI:2142347]
Coordinates
chr7:30798859-30802281:+
Coord C1 exon
chr7:30798859-30798908
Coord A exon
chr7:30800085-30800208
Coord C2 exon
chr7:30802186-30802281
Length
124 bp
Sequences
Splice sites
3' ss Seq
GTGTCTGCATGTGGTTTCAGGAT
3' ss Score
8.33
5' ss Seq
TGAGTAAGC
5' ss Score
5.78
Exon sequences
Seq C1 exon
AAGCCGCAAGAGGAAGAATGAAGAGTTTTGCCTTTAAGGACATGGCCAAG
Seq A exon
GATCTGAGGTTCGAGGATGTGGTCATTTACTTCTCTCTGGAGGAGTGGGAGTGCTTGCGCCATTCCCACAGGAATCTGTACCGAGCTGTGATGTTGGATAACTACAGCAACCTGCTGTCACTGA
Seq C2 exon
GTCTTGCTGATACTAAGCCACGGGTGGTCTCCCTTCTAGAACAGGGCAAAGAGCCCTGGATGGTTATGAGGAATGAGACAAAAATTTGGCATCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000074221-'16-15,'16-13,17-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.008
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=97.6)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCCGCAAGAGGAAGAATGA
R:
CAGGATGCCAAATTTTTGTCTCA
Band lengths:
146-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: