MmuEX6009690 @ mm10
Exon Skipping
Gene
ENSMUSG00000074221 | Zfp568
Description
zinc finger protein 568 [Source:MGI Symbol;Acc:MGI:2142347]
Coordinates
chr7:30013840-30017262:+
Coord C1 exon
chr7:30013840-30013889
Coord A exon
chr7:30015066-30015189
Coord C2 exon
chr7:30017167-30017262
Length
124 bp
Sequences
Splice sites
3' ss Seq
GTGTCTGCATGTGGTTTCAGGAT
3' ss Score
8.33
5' ss Seq
TGAGTAAGC
5' ss Score
5.78
Exon sequences
Seq C1 exon
AAGCCGCAAGAGGAAGAATGAAGAGTTTTGCCTTTAAGGACATGGCCAAG
Seq A exon
GATCTGAGGTTCGAGGATGTGGTCATTTACTTCTCTCTGGAGGAGTGGGAGTGCTTGCGCCATTCCCACAGGAATCTGTACCGAGCTGTGATGTTGGATAACTACAGCAACCTGCTGTCACTGA
Seq C2 exon
GTCTTGCTGATACTAAGCCACGGGTGGTCTCCCTTCTAGAACAGGGCAAAGAGCCCTGGATGGTTATGAGGAATGAGACAAAAATTTGGCATCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000074221-'16-20,'16-18,18-20
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=97.6)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCCGCAAGAGGAAGAATGA
R:
CAGGATGCCAAATTTTTGTCTCA
Band lengths:
146-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types