HsaEX0073961 @ hg19
Exon Skipping
Gene
ENSG00000198453 | ZNF568
Description
zinc finger protein 568 [Source:HGNC Symbol;Acc:25392]
Coordinates
chr19:37465322-37482748:+
Coord C1 exon
chr19:37465322-37465368
Coord A exon
chr19:37482078-37482201
Coord C2 exon
chr19:37482653-37482748
Length
124 bp
Sequences
Splice sites
3' ss Seq
GTATTTATTTTTGGTTTCAGGGC
3' ss Score
9.79
5' ss Seq
TGGGTAACT
5' ss Score
4.34
Exon sequences
Seq C1 exon
AACCCAGAAGAGGAGAGAACTGCTGTGCGTCTGAAGTGATGGCGGAG
Seq A exon
GGCTTGAAGTTCAAAGATGTGGTCATTTACTTCTCTCAAAAGGAGTGGGAATGCTTGCACTCTGCTCAGAAGGATTTGTACCGAGATGTAATGTTGGAAAATTACGGCAACCTGGTCTTACTGG
Seq C2 exon
GGCTTTCTGATACTAAGCCAAATGTGATCTCCTTATTGGAGCAGAAGAAAGAGCCCTGGATGGTTAAGAGGAAGGAGACAAAAGAATGGTGTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198453_MULTIEX2-2/2=C1-C2
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.030 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0301610=Exostosin=FE(9.5=100)
A:
PF0135222=KRAB=WD(100=97.6)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAGAAGAGGAGAGAACTGC
R:
TGGACACCATTCTTTTGTCTCCT
Band lengths:
140-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)