HsaEX0074108 @ hg19
Exon Skipping
Gene
ENSG00000121864 | ZNF639
Description
zinc finger protein 639 [Source:HGNC Symbol;Acc:30950]
Coordinates
chr3:179042830-179046139:+
Coord C1 exon
chr3:179042830-179043110
Coord A exon
chr3:179045349-179045419
Coord C2 exon
chr3:179046071-179046139
Length
71 bp
Sequences
Splice sites
3' ss Seq
CTTTCATGTTTTACTTACAGGCA
3' ss Score
10.55
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
Exon sequences
Seq C1 exon
ACAGAGTTTCACTCCTGTTACCCAGGCTGGAGGACAATGATGTGATCTCGGGTCACCACAACCTCCGCCTCCCGGATTCAAGCGATTCTCATGCCTCAGCCTCCCGAGTAGCTCAGATTACAGGCATGTGCCACCACGCCCGGCTAATTTTGTATTTTCAGTCGAGACGGGGTTTCCCCATGTTGGTCAGGCTAGTCTTGAATTCCCGACCTCAGGTGATCTGTTCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAACCACTGCACCCGGCGAG
Seq A exon
GCATTTTTTACTGTCTACAGAAACTTATTGTAATTCATTTTTCCTCACTCCAGTAGTAAGAATTATACCAA
Seq C2 exon
ATTGAAAAGATATGAATGAGTATCCTAAAAAAAGAAAAAGGAAGACTCTACACCCTTCTCGTTATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000121864_MULTIEX1-3/3=2-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.969
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCCCATGTTGGTCAGGCTA
R:
ACGAGAAGGGTGTAGAGTCTTCC
Band lengths:
170-241
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)