MmuEX0053508 @ mm9
Exon Skipping
Gene
ENSMUSG00000027667 | Zfp639
Description
zinc finger protein 639 [Source:MGI Symbol;Acc:MGI:1915028]
Coordinates
chr3:32411923-32416061:+
Coord C1 exon
chr3:32411923-32412114
Coord A exon
chr3:32413306-32413376
Coord C2 exon
chr3:32415951-32416061
Length
71 bp
Sequences
Splice sites
3' ss Seq
CTGGTCTCTTTTACTTGTAGGCA
3' ss Score
9.43
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
Exon sequences
Seq C1 exon
TTTTTCAGATTATCACCTCCCCTCCTGCTTGTGCTTAAGAACTTGAAGCAAGATGAGCTTGCTGCTGGCAGCATGGAAGGAGGGTTCACACATGCACAGTTAGTTACCTGATGTCAGAGCTCCGAAGACAAGTGTGCCATCTATGTCGTAATGGACTTTAGTGGCGTTGGTTTCTTCCTTGCTTAGAATGAG
Seq A exon
GCACTTTTTGTCATTTGTGGAAACTTGCCTGTAATTCATTTTCCTCACTGCAGTATTGAGAGTTATACCAA
Seq C2 exon
ATTCTTCTGGAATAAGCAGAATTGCAGATGGAGTCAGTGGGATTTTTTCTGATCACTGTTACAGTGTCTGCTCTATGAGACAGCCAGACTTAAAATATTTTGACAACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027667_MULTIEX1-2/5=1-4
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.316
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCATGGAAGGAGGGTTCAC
R:
ATCCCACTGACTCCATCTGCA
Band lengths:
167-238
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: