HsaEX0074108 @ hg38
Exon Skipping
Gene
ENSG00000121864 | ZNF639
Description
zinc finger protein 639 [Source:HGNC Symbol;Acc:HGNC:30950]
Coordinates
chr3:179325042-179328351:+
Coord C1 exon
chr3:179325042-179325322
Coord A exon
chr3:179327561-179327631
Coord C2 exon
chr3:179328283-179328351
Length
71 bp
Sequences
Splice sites
3' ss Seq
CTTTCATGTTTTACTTACAGGCA
3' ss Score
10.55
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
Exon sequences
Seq C1 exon
ACAGAGTTTCACTCCTGTTACCCAGGCTGGAGGACAATGATGTGATCTCGGGTCACCACAACCTCCGCCTCCCGGATTCAAGCGATTCTCATGCCTCAGCCTCCCGAGTAGCTCAGATTACAGGCATGTGCCACCACGCCCGGCTAATTTTGTATTTTCAGTCGAGACGGGGTTTCCCCATGTTGGTCAGGCTAGTCTTGAATTCCCGACCTCAGGTGATCTGTTCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAACCACTGCACCCGGCGAG
Seq A exon
GCATTTTTTACTGTCTACAGAAACTTATTGTAATTCATTTTTCCTCACTCCAGTAGTAAGAATTATACCAA
Seq C2 exon
ATTGAAAAGATATGAATGAGTATCCTAAAAAAAGAAAAAGGAAGACTCTACACCCTTCTCGTTATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000121864_MULTIEX1-3/3=2-C2
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.973
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCCCATGTTGGTCAGGCTA
R:
ACGAGAAGGGTGTAGAGTCTTCC
Band lengths:
170-241
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development