HsaEX0074114 @ hg19

Exon Skipping

Gene

ENSG00000187815 | ZNF642

Description

zinc finger protein 642 [Source:HGNC Symbol;Acc:24708]

Coordinates

chr1:40947435-40962015:+

Coord C1 exon

chr1:40947435-40947526

Coord A exon

chr1:40955201-40955296

Coord C2 exon

chr1:40960593-40962015

Length

96 bp

Sequences

Splice sites

3' ss Seq

TTTTTTTACTACATAAGCAGGAT

3' ss Score

3.69

5' ss Seq

CAGGTGAGA

5' ss Score

9.22

Exon sequences

Seq C1 exon

CTCTGCTGTCTCAGGATGCTGAGGACGTAAAGACCCAGAGAGAAAGTTTAGAGGATGAAGTGACCCCTGGACTCCCGACAGCAGAATCCCAG

Seq A exon

GATATCAACTTTCCAAACCTAGTGTGATATCCCAGTTAGAGAAAGGAGAAGAGCCATGGATGGCAGAGAAAGAAGGCCCAGGAGATCCCAGTTCAG

Seq C2 exon

ACTTGAAGAGTAAAATAGAAACCATTGAGTCAACTGCAAAGAGTACCATTTCACAGGAGCGCTTATATCATGGCATTATGATGGAAAGTTTCATGAGGGATGATATAATTTATTCCACGTTGAGAAAAGTCTCCACATATGATGATGTCTTAGAAAGGCACCAGGAAACTTGTATGAGAGATGTGAGACAAGCCATCTTGACCCATAAGAAGAGAGTCCAAGAAACTAACAAATTTGGGGAAAATATCATTGTGCATTCAAATGTTATTATTGAACAGAGGCACCATAAATATGATACACCTACAAAGCGGAACACATACAAATTAGATTTGATTAATCATCCAACAAGTTACATAAGAACAAAAACCTATGAATGTAATATATGTGAAAAAATCTTCAAACAACCTATTCACCTTACTGAACATATGAGAATTCATACTGGTGAGAAACCTTTCAGATGTAAGGAATGTGGAAGGGCCTTTAGTCAAAGTGCATCCCTC

VastDB Features

Vast-tools module Information

Secondary ID

ENSG00000187815_MULTIEX1-2/2=C1-C2

Average complexity

C3*

Mappability confidence:

100%=100=100%

Protein Impact

Alternative protein isoforms (Ref)

No structure available

Features

Disorder rate (Iupred):

C1=0.914 A=0.606 C2=0.129

Domain overlap (PFAM):

C1:

PF0202312=SCAN=PD(10.4=16.1)

A:

PF0135222=KRAB=PD(0.1=0.0)

C2:

PF134651=zf-H2C2_2=WD(100=6.8),PF134651=zf-H2C2_2=WD(100=6.8),PF134651=zf-H2C2_2=WD(100=6.8),PF134651=zf-H2C2_2=WD(100=6.8),PF134651=zf-H2C2_2=WD(100=6.8),PF134651=zf-H2C2_2=WD(100=6.8),PF134651=zf-H2C2_2=WD(100=6.8),PF134651=zf-H2C2_2=WD(100=6.8)

Main Inclusion Isoform:

ENSP00000361790