MmuEX6095742 @ mm10
Exon Skipping
Gene
ENSMUSG00000064141 | Zfp69
Description
zinc finger protein 69 [Source:MGI Symbol;Acc:MGI:107794]
Coordinates
chr4:120930137-120935193:-
Coord C1 exon
chr4:120935067-120935193
Coord A exon
chr4:120934333-120934428
Coord C2 exon
chr4:120930137-120931506
Length
96 bp
Sequences
Splice sites
3' ss Seq
TTCTTTAACTCCATAAGCAGGAT
3' ss Score
4.37
5' ss Seq
TAGGTAAGA
5' ss Score
9.14
Exon sequences
Seq C1 exon
GAATCGTTGACTTTCAAGGACATTGCCGTGGACTTATCCCAGGAGGAGTGGGGACAGCTGGCTCCTGCATACCAGGATTTGTATCGGGAGGTGATGCTGGAGAACTACAGAAACCTGGTGTCAGTGG
Seq A exon
GATATCAACTTTCCAAGCCTACTGTGATTTCCCAGTTGGAAAAAGGAGAGGGACCATGCATGGCAGAGAGTCAAGGCCCAGAGGATCCCATTTTAG
Seq C2 exon
ATGTGAAGAATAAACTAGAAACCAAGGAGTCAACTGCAGAGGATGACATTTCTGTCAAGCTCGATCATGGCATCACGAGGGGAAGGCTGATAGAGGATGATATAGTTTGTTCTCCATTGAAAAAAGCCTCCAGCTACAGTGATACATTAGAGAGTCACCGGGCAACCTGTGGGAAAGGCACGAGACGAGCCATTTGGACCCACAAAAAGAAACGCCAAGAAGGGAACAAATTGGAAAACCCAGAGAGTTCCAATGTTATTTTAGAACAGAAGCACCGTAAACACAAACCAGCCAGAAAGAGGAACAAGTATAAATTAGATTCAATTGATCACCCAGTGAGCTGTATGAGAGCCAGAAGGTACCCATGTAATGTGTGTGAGAAAATGTTTAAGCAACCCATTCACCTTGTCGAGCACATGAGAACTCACACTGGCGAGAAACCGTTCCGGTGCAAGGAGTGTGGGAGGGCCTTTAGTCAGAGCGCATCTCTCAATACGCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000064141_MULTIEX1-2/2=C1-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.418 A=0.707 C2=0.337
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=100.0)
A:
NO
C2:
PF134651=zf-H2C2_2=WD(100=6.8),PF134651=zf-H2C2_2=WD(100=6.8),PF134651=zf-H2C2_2=WD(100=6.8),PF134651=zf-H2C2_2=WD(100=6.8),PF134651=zf-H2C2_2=WD(100=6.8),PF134651=zf-H2C2_2=WD(100=6.8),PF134651=zf-H2C2_2=WD(100=6.8),PF134651=zf-H2C2_2=WD(100=6.8)
Main Skipping Isoform:
ENSMUST00000130702fB19986
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGTGGACTTATCCCAGGAGG
R:
CCTCGTGATGCCATGATCGAG
Band lengths:
182-278
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types