RnoEX0002943 @ rn6
Exon Skipping
Gene
ENSRNOG00000028662 | AABR07049821.2
Description
NA
Coordinates
chr5:139857363-139864393:-
Coord C1 exon
chr5:139863664-139864393
Coord A exon
chr5:139862930-139863025
Coord C2 exon
chr5:139857363-139858963
Length
96 bp
Sequences
Splice sites
3' ss Seq
TTCTTTAACTCCATAAGCAGGAT
3' ss Score
4.37
5' ss Seq
TAGGTGAGA
5' ss Score
6.95
Exon sequences
Seq C1 exon
TTACCACAGAGCCGCCTCCCTCCGTGCCGCTCTTCCTCCTCAGACAGATGTTCACCCAGGCCTTTGGAACATTCTGGAATACCCTTCCCCGAGATTTCCACATGGCTCTCCCCCATCGAATCACTGCCTCTAGCCAAACTATGTTTCGGAGAACCCTGCTTTCTTCAGCACCCCAAAACAAGATCACCTCAGCTCTCACTGGTGGTTTCACTTCTTCATGTTTCTTTTCTGTCCTGTATATGTAATTACTTATAGCAGCCTCTAGAAAATCCTGGTGAAATTGGTGTGGAATCTCTGAACTTGGAATACTGCCAAGGCTCCTTAGACTTTGACCGGGGTGGACTCTGACTCCTCTGACTGTTTGATATTGTAGGAATTGTTGACTTTCAAGGACATAGCTGTGGACTTATCCCAGGAGGAATGGGGGCAACTGGCTCCTGCATACCGGGATTTGTATCGGGAGGTGATGCTGGAGAACTACAGAAACCTGGTATCAGTGG
Seq A exon
GATATCAACTTTCCAAGCCTACTGTGATTTCCCAGTTGGAGAAAGGAGAGGGACCATGGACGGCAGAGAGTCAAGGCCCAAAGGATTCCATTTTAG
Seq C2 exon
ATGTGAAGACTAAGCTAGAAACCAAAGAGTCAACTTCAGAGGATGACATTTCCGTCAAGTTTTATCATGGCGCCATGCGGGGAAGGCTCAGCGAGGACCATATAGTTTGTTCTCCATTGAAAAAAGCCTCCAGCTACGGCGATACATTAGAGAGGCACCCAGAAACCTGTGGGAAAGGCATGAGACAAGCCGTTTGGACCCACAAAAAGAAACACCAAGAAGTGAACAACCTGGAAAGCCCAGAGAGCGCCAATGTTCTTTTAGAACAGAAGCATCGTAAATACAAACCAGCCAGAAAGAGGAACAAATATAAATCAGATTCAGTTACTCATCCAGGGAGCTGCATAAGAACCAGAATGTACCGGTGTAATATATGTGAAAAGATGTTCAAACAACCCGTCCACCTTACTGAGCACATGAGAATTCATACTGGTGAGAAGCCTTTCCGGTGTAAGGAGTGTGGCAGGGCCTTTAGTCAAAGTGCATCTCTTAATACACAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000028662_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.667 C2=0.352
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF134651=zf-H2C2_2=WD(100=6.8),PF134651=zf-H2C2_2=WD(100=6.8),PF134651=zf-H2C2_2=WD(100=6.8),PF134651=zf-H2C2_2=WD(100=6.8),PF134651=zf-H2C2_2=WD(100=6.8),PF134651=zf-H2C2_2=WD(100=6.8),PF134651=zf-H2C2_2=WD(100=6.8),PF134651=zf-H2C2_2=WD(100=6.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACTGGCTCCTGCATACCG
R:
ATATGGTCCTCGCTGAGCCTT
Band lengths:
176-272
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]