BtaEX0041160 @ bosTau6

Exon Skipping

Gene

ENSBTAG00000007714 | ZNF235

Description

zinc finger protein 235 [Source:HGNC Symbol;Acc:HGNC:12866]

Coordinates

chr18:52550188-52559972:-

Coord C1 exon

chr18:52559846-52559972

Coord A exon

chr18:52558912-52559004

Coord C2 exon

chr18:52550188-52552154

Length

93 bp

Sequences

Splice sites

3' ss Seq

CCCCACCTTTTTTTTCTCAGGGC

3' ss Score

10.1

5' ss Seq

CAGGTGAGA

5' ss Score

9.22

Exon sequences

Seq C1 exon

GAGGCATTGACCTTCAAGGATGTGGCTGTGACCTTCACCGAGGAGGAGCTGGGGCTGCTGGACTTGGCCCAGAGGAAGCTGTACCGAGACGTGATGCTGGAGAACTTCCGGAACCTGCTGTCCGTGG

Seq A exon

GGCACCAGTCCTCCAAGCCAGACATGATATCTGAGTTGGAGAGAGAGGAGTTCTGGATGACAGAGATCCAGCCCCAGAGAGGAGGGTGTTCAG

Seq C2 exon

GAGGCGGGAATCACGAGATGGCAACTGTTCAGGACACAGGAGTGAGGTGCCTTTCACGGGTAGAGCTTTCATGCTGGCAAATCAGGAGACACGTTGTGAGCAAATCAACTAAAAGCCAAGACTCTGTGATAAATACTCAAAAGAAGAGTTCTCAGTCCCCCAAACAACATAATTCCCCTGCAGGAGTGTCCGCTCAGGCTTCCATGGAAGGCAGCTGTTTTGTGACTCTTATAGAGGATCATTCTGATATTATTGAAAATCAAGCATTTCCAGCTGGGAGAGCTCTGAATTCCTGGAGTAAACTCTGTCTGAGCGAGACCCAGAATTACCAGAGGGGTTGTCAGCTGACTTCCATGAAGAACAAGATCTGTATGTTTGCTCCATGTGTTGACTTTTTCCCACGTATCTCCCCCCACCATGACGACCACACAGTGCCCCAAAGAGAGAAGGCTCAGGGCACGAGAGAGTGTGGCAAAGACCTCCTCAAGGCATCACCACTA

VastDB Features

Vast-tools module Information

Secondary ID

ENSBTAG00000007714_CASSETTE1

Average complexity

S

Mappability confidence:

100%=100=100%

Protein Impact

Alternative protein isoforms (Ref)

No structure available

Features

Disorder rate (Iupred):

C1=0.000 A=0.406 C2=0.224

Domain overlap (PFAM):

C1:

PF0135222=KRAB=WD(100=95.3)

A:

PF0135222=KRAB=PD(0.1=0.0)

C2:

PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF079757=C1_4=WD(100=8.1),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=3.8),PF134511=zf-trcl=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=3.8)

Main Inclusion Isoform:

ENSBTAP00000010143