HsaEX6095526 @ hg38
Exon Skipping
Gene
ENSG00000159917 | ZNF235
Description
zinc finger protein 235 [Source:HGNC Symbol;Acc:HGNC:12866]
Coordinates
chr19:44234755-44299732:-
Coord C1 exon
chr19:44299606-44299732
Coord A exon
chr19:44298808-44298903
Coord C2 exon
chr19:44234755-44234869
Length
96 bp
Sequences
Splice sites
3' ss Seq
TAAATACTATCTTTTTATAGGAC
3' ss Score
9.35
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GAGGCAGTGACATTCAAGGATGTGGCTGTGGCCTTCACTGAGGAGGAGCTGGGGCTGCTGGACTCTGCCCAGAGGAAGCTGTACCGAGATGTGATGCTGGAGAACTTTAGGAACCTGGTTTCAGTGG
Seq A exon
GACATCAGTCCTTCAAACCAGATATGATATCCCAGTTGGAGAGGGAAGAAAAGCTTTGGATGAAGGAGCTTCAAACCCAAAGAGGTAAGCATTCAG
Seq C2 exon
AAACCTGAATAGAGTCACCTTGTAATAACTGGGAACTCTTCCCCTGAAGACACCTGGTTAATTCACTTGCAACCTGTTTCCAGATTTGCCAGCAGGACAGCTCTTGATTTGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000159917-'3-10,'3-4,5-10=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.197 C2=1.000
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTCAAGGATGTGGCTGTGGC
R:
AACCAGGTGTCTTCAGGGGAA
Band lengths:
175-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains