HsaEX6095526 @ hg19

Exon Skipping

Gene

ENSG00000159917 | ZNF235

Description

zinc finger protein 235 [Source:HGNC Symbol;Acc:12866]

Coordinates

chr19:44790501-44803885:-

Coord C1 exon

chr19:44803759-44803885

Coord A exon

chr19:44802973-44803056

Coord C2 exon

chr19:44790501-44793349

Length

84 bp

Sequences

Splice sites

3' ss Seq

TAAATACTATCTTTTTATAGGAC

3' ss Score

9.35

5' ss Seq

GAGGTAAGC

5' ss Score

9.85

Exon sequences

Seq C1 exon

GAGGCAGTGACATTCAAGGATGTGGCTGTGGCCTTCACTGAGGAGGAGCTGGGGCTGCTGGACTCTGCCCAGAGGAAGCTGTACCGAGATGTGATGCTGGAGAACTTTAGGAACCTGGTTTCAGTGG

Seq A exon

GACATCAGTCCTTCAAACCAGATATGATATCCCAGTTGGAGAGGGAAGAAAAGCTTTGGATGAAGGAGCTTCAAACCCAAAGAG

Seq C2 exon

GAGACAGGAATCAAAATGAGATGGCAACTCTTCACAAAGCAGGATTAAGGTGCTTTTCACTGGGAGAGCTTTCATGCTGGCAAATCAAGAGACACATTGCGAGCAAATTAGCCAGAAGTCAAGACTCCATGATAAATATTGAAGGAAAGAGCTCTCAGTTCCCCAAGCACCATGATTCCCCCTGTCAAGTGGGAGCAGGAGAATCTATTCAAGCTTCTGTGGATGACAACTGTCTAGTGAATCACATAGGGGATCATTCCAGTATCATTGAAAATCAAGAATTTCCAACTGGGAAAGTTCCGAATTCTTGGAGTAAAATATATCTGAATGAGACACAGAATTATCAGAGAAGTTGTAAGCAGACTCAGATGAAAAACAAACTATGTATATTTGCTCCATATGTTGACATTTTCAGTTGTATTTCACACCACCATGATGATAATATAGTGCACAAAAGAGATAAAGTTCATAGCAATAGTGATTGTGGTAAAGATACCCTA

VastDB Features

Vast-tools module Information

Secondary ID

ENSG00000159917-'3-5,'3-3,4-5=AN

Average complexity

A_S

Mappability confidence:

100%=100=100%

Protein Impact

Alternative protein isoforms (Ref)

No structure available

Features

Disorder rate (Iupred):

C1=0.000 A=0.327 C2=0.116

Domain overlap (PFAM):

C1:

PF0135222=KRAB=WD(100=95.3)

A:

PF0135222=KRAB=PD(0.1=0.0)

C2:

PF143691=zf-RING_3=WD(100=6.5),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.8),PF134511=zf-trcl=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.8)

Main Inclusion Isoform:

ENSP00000291182