RnoINT0005501 @ rn6
Intron Retention
Gene
ENSRNOG00000028662 | AABR07049821.2
Description
NA
Coordinates
chr5:139857363-139863025:-
Coord C1 exon
chr5:139862930-139863025
Coord A exon
chr5:139858964-139862929
Coord C2 exon
chr5:139857363-139858963
Length
3966 bp
Sequences
Splice sites
5' ss Seq
TAGGTGAGA
5' ss Score
6.95
3' ss Seq
TCCCATTTTTTCCGATTCAGATG
3' ss Score
9.82
Exon sequences
Seq C1 exon
GATATCAACTTTCCAAGCCTACTGTGATTTCCCAGTTGGAGAAAGGAGAGGGACCATGGACGGCAGAGAGTCAAGGCCCAAAGGATTCCATTTTAG
Seq A exon
GTGAGATCAGGGTAGATGAGCCCTTTGGGTAGGTAGGCCAGAGTGCTCAGTCTCCCCAGGCTGTCGGGAAGGCCCAGGGCACTGACAGGACCTGCACTAGGCCTCATTTCATTCTTCACTGCTCTTTCCCCTTCCAAACCTTTCTGAGAGTCTTTGTAATTAGAAGGGAGAGAAGTCTTGGCTCCTTAGAGTTAAACCCGATCCCCTCACGGAATCGGAAGTAGCTGACTGGAAGCGCCTCGTGGATACTTGCTGAATTCAGTGCCGTGTTACATTCCACAAATCTTCCTCTCTTCGGCTTTTTATGTCTCCTTTTCCCACTGTTAGTTTATGCTCCCAACTTCAGTTTCGATTCTCCTTTTAACTCAGGTATATACTTTTCTTCATAACGGCTTCATAAAAAGTCCTGCCAGAGGGCTGGTGAGACGGCTCAGCAGTAAAGGTCCTTGCTGCCACAACTAAAGACCTGAGTGCCACCCCTGTGGCCCACAGTGTGAAAAAAGAGAGCTGGCTCCTGAAAGCTGTCTTCTGACCTCTATCCTCATGTGTGCTGTGCCATGTATGTGTACACACACACACACGCACACACATACATACACACACACACACGCAATTTAAAAACTTAACTTTTCTCTTACAAATACTCAGGAAAGGTAAAAAAATAATACAATATTCACCCAGTGAATTTACATTAATGTTCAAGTGTTGGCAAAAATGCTGATCTCTGGGAACCCTCAAGCCTGCTGACTGGAAACATAAAACACTGAAGCTGACTGAAAAGCCAAATGAAGGGACATCTGTGTCATGACCCAGCAGTATGCTTCAGCCAACTCTCCTAGAGGAACCCAGACAGACATGTACATGTGTACATATATCAGATCCATATAACCTCCAGTGTGCAATTTAGGAATTAGTGGCAGAAGGGTCTGGAATTCAGGGCCAGCCTGGCTTACCTGAGACTCTGCCTCAAAAAATAAAACGGTTCAGGATTTTCTCCACAAAGGTCTTACACATGTGACATATCTCGTGTTAGATTTATTCTGAGATCCTGCACTTGCTACCATAGGTGATATACTTTTAGAGTCATATGTTGTTTATTGCTGCTAAGTGTAGATTGCTGTCTGTACGCAGGTGAGGGTGGGTGAAAGACAAGGCTAGAGCCTGTGATGGACAGTAGAGAAGGAGGGTGGACTGGGAGCTTTTGAGAGGCAGGAGAGAGAGGAGAGAGAAGAGAAGGAAGGAAGATGGAGGAAGAGAAGAATGACCCAGATCCATGTGGCTTTAAATAGCCACGGGTAGCTATGAAAATCATCATATAAGGGATGGATTATTACAGGACAATTTCTCCAATCTTAGTGGGCAGCTTATATCAATATCAATTGGCTCTGAGTTCACTGTGTGGGCGTTTTGTGGGTGAGAATTTACTGATATAAATCTGACTGATAAAGTACAAGTCTCTAGAGTTTTGATTTTACTGGGTTTTGTGACAGTAACCTCGAGATGGGCGGTCGCATGGGGCTAGCCATGGAGGCAGTGAGACCACTGGGGCCAGAGAGTAGCCGGCGCAAGCTGGCATGGTGCTTCCTTTTCTGCCATTTAATGCAACATCTAGGTAGTAATACCTTACTTTGAACATGTCTACTTGACATTTTAAACTTTAATGCATTGTTTTGGGGAGTTTGAAACAAGGCATTATTATTCTGTAGTCTGTGCTGGCCTCAAACTGAAGATGATCCTCCTGCCTCAGTTTTCAGAATATCAGGCCAGAATCATCACACCCTGCTTGATTTCAGAATTAACACTCACAGCGATCTTAAGTTACAAACAGTAACTGCTCATAAACAGTTACAAACAATAGTAGCCTGGGCAGCCTCCTGGGTTTTATCATCCACAACCGATGGTGCTGAGTGTGATACAGGCTGAGGGTGCGGTGCAGGGGCAGAGACCGCCTGCGTGTGCTGGGATTGCAAAGCAAGCAACCAAGAGAAACCAATGAAAGCTCTGTGAGCCTGGTCGTCTCTTGATGGAATCTTTTTTTTTTTTTTTAATTCTTATAATCGGAGCTGGGGACCAAACCCAGGGCCTTGCGCTTGCTAGGCAAGTGCTCTACCGCTGAGCTAAATCCCCAACCCCTTGATGGAATCTTTAAAGTAACCTTGTAGAGGGTTTTTTAAAAGAAGCACTAGCCAGCTACTCTGTCCTAGAGTGAGGGGCAGGAGATTAGGACTTCAAGGTCATACTCACCTTTAAAGGAGGATTGAGGCCAGACTGGGCTACTTGAGACCCTGTCTTTGGAAAAAAAAAAAAAAGACCTAAAATATAAATAACAGGTATTGTGGGGTTGGGGATTTTGCTCAGTGGTAGAGCGCTTGCCTAGGAAGCGCAAGGCCCTGGGTTCGGTCCCCAGCTCCGAAAAAAAAAAAAAAAAAAGAACTAAATAACAGGTATTTATTTAATTCAGTGAAATAGCAGAATTCCAATTTCAAAGTTCAGTCTTGCCTGATCCTGTCCCTGAGTTTTGGAGTGAGGTACACAGATGGTCTCTTCCCATCATCCCCTTCTTTCCAGGCCCAGAGCCAAGGCCGATAAATCAGTACTGTCTCTGTTGAGAGCTTGAAATTTGAAAATGCTTAAGATCCTTTCATACTGACTTAAAGATCTCACAGGAAAGTATATCCTTCATGGACATAAACCCATCACCTGAAATATTAGTGATGATGTAATGAGTTACTAAGGAAGAAAACTAGCCAAAATTTAAAAAAAAATTTTTTTTTTGTTTTTATTTCTCTGCAGTCCTGGCTGTCCTGGAACTCACTCTATAGACCAGGCTGGCTTCAAACTCACAGAGATCCTCCTGCCTCTGCCTCCTGAGTGCTGGGATTGAAAGTGTGCACTGGCACTGGGGTTGGGAGTAGCATCTTTTTAATATTTCTGAGATAGTTTTTCAAAATATTTGTCAGTTTAAAGCCATAATGTTGAAGGCATAGTCCTTCAATGTCATTTTTTAGTATTATTAGAACACAGGTGGGCTGGAGAGATGGCTCAGTGGTTAAGAGCAATGACTGCTCTTCCAGAGGTCCAGAGTTCAAATCCCATCAACCACATGGTGGCTCACAATCATCTGTAATGAGATCTGATGCTCTGTTCTGGTGTGTCTGAAGACAGTTGCAGTGTACTTATAGATAATAAATAAATAAATCTTAAAAAAAAAAGCAAAACAAAACAAGTAAGCCACCTGTGTGACACACAGCCATCATTTAAAAGGTAGAGGCGAAAAAGCAGGAACTCGGACACCTTTAGCCCTGTGAGACCTCATCTCAAAACAAGAGAAAAACAAACAAAACAGAAAAAGAAGAAAGAGCTGTAGAGAGAATTAAATGTTGCAAATTTTGTAACATATTAAATCGGATAAGAACAGTAGACACTGTTTCATGTTTATCAAGTATATAGTGTGTGTATGCCTTCAGGCCAGAGGGGGGCACCAGATCTCATTATAGACGGTTGTGAGCCACCATGTGGTTGCTGGGAATTGAACTCAGGACCTCTGGGAGAGCAGTCAGTGCTCTTAACCTCTAAGTCATCTCTCCAGCCCCACTTTATTTGTTTTTGAGATAGGCTCTCAAGTATCTTAAGCTGGTCTGTACTCACTGCCTAGCCATTGATAACTTTGAACTTCTGATCTTCCTGCCTCCCCTTCTTGAGTGATGGGTACAGGCATAGGCCATCTCATCTAGTTTACACAGTGACCAGGGTTTACACAGTGGCACAGGGCAAGCACTGAATATCCCTGTTCTCTGCTTCTTAATTCATTCCTTACTGTCTGTCCAGTCTGCATAGCTCTGTCTAAACACAGTAAAAACCTCACTCTGATTTCCATACTGTATCTAAATCTCTTCCACAGCATTCACAGTGTTTGATTTCCTTCAAAGCATAATGAATGAGTTATTCCCATTTTTTCCGATTCAG
Seq C2 exon
ATGTGAAGACTAAGCTAGAAACCAAAGAGTCAACTTCAGAGGATGACATTTCCGTCAAGTTTTATCATGGCGCCATGCGGGGAAGGCTCAGCGAGGACCATATAGTTTGTTCTCCATTGAAAAAAGCCTCCAGCTACGGCGATACATTAGAGAGGCACCCAGAAACCTGTGGGAAAGGCATGAGACAAGCCGTTTGGACCCACAAAAAGAAACACCAAGAAGTGAACAACCTGGAAAGCCCAGAGAGCGCCAATGTTCTTTTAGAACAGAAGCATCGTAAATACAAACCAGCCAGAAAGAGGAACAAATATAAATCAGATTCAGTTACTCATCCAGGGAGCTGCATAAGAACCAGAATGTACCGGTGTAATATATGTGAAAAGATGTTCAAACAACCCGTCCACCTTACTGAGCACATGAGAATTCATACTGGTGAGAAGCCTTTCCGGTGTAAGGAGTGTGGCAGGGCCTTTAGTCAAAGTGCATCTCTTAATACACACCGGAGAATCCACACTGGGGAGAAGCCCTTCGAATGTCAGGAGTGCGGCAAAGCCTTCCGACATCGCTCGTCCCTCAACCAGCATCGCAGGACTCACACGGGAGAGAAACCCTTTGTGTGTGATAAATGTCAGAAGGCCTTTAGCCAGAACGTCAGCTTGGTCCAACATTTGAGGACTCATTCTGGAGAGAAGCCCTTTAGCTGCAATGAATGTGGGAAAACCTTCCGACAGATTAGACACCTCAGTGAACATGTGAGGATTCACACCGGGGAGAAGCCCTATAAGTGCCCTTCGTGCTGTAAGACGTTCAGTCACAGAGCGTACCTCACACATCACCAGCGAATCCACACCGGGGAGAGACCCTACAGATGTAAGGAGTGCGGGAAAGCCTTCCGGCAGAGGATACACCTTAACAACCATAAGACTGTGCATACGGGACTGAAGGCCTATGAGTGTAAGCGTTGTGGGAAAGCTTACAGGCACGACTCGTCCTTTAAGAAACACCAGAGGCATCACTCTGGAGAGAAGCCGTATGAGTGTAACGAATGTGGAAAGTCCTTCAGCTATAATTCATCCCTGAGCCGACACCATAAAATACACAGAAGGAATGCCTCTCCAGATGATCCAGGACATAAGAACAACAGGCAGCTCTAAATTGGTCATACTGAGCTTTAAAATTTCAGGACTCAAGGCTGGGGATTTAGCTCAGTGGTAGAGCGCTTACCTAGGAAGCGCAAGGCCCTGTGTTCGGTCCCCAGCTCCGAAAAAAAAAAAAAGAACCAAAAAAAAAAAAATTTCAGGACTCAGATTAACTTGAGAAGTTGATAACGTTGGTGGCAACTTTGGAGTTTGCCAAAAGTGTAAATACACACTATGTCGATTACTACTGTCTGACACACAAAATGATAAGCATTATGAAAAATTCACAATTATTTTTTTTAATTTCATGGTAGATGAATAAATTATTTCTTATGAACTCACTGATTTATAGATCAGTGTTTGGGAACTGCTGTTTAAAATGTTACCACCTAGACTGAAGAGGTGGCCCGGCAGGCAAAGGGCTTTGCCACTAAGTGCAGTAACTTACCTGATTTTGATCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000028662:ENSRNOT00000030016:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.667 A=NA C2=0.352
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=6.8),PF134651=zf-H2C2_2=WD(100=6.8),PF134651=zf-H2C2_2=WD(100=6.8),PF134651=zf-H2C2_2=WD(100=6.8),PF134651=zf-H2C2_2=WD(100=6.8),PF134651=zf-H2C2_2=WD(100=6.8),PF134651=zf-H2C2_2=WD(100=6.8),PF134651=zf-H2C2_2=WD(100=6.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]