BtaINT0165070 @ bosTau6
Intron Retention
Gene
ENSBTAG00000007714 | ZNF235
Description
zinc finger protein 235 [Source:HGNC Symbol;Acc:HGNC:12866]
Coordinates
chr18:52550188-52559004:-
Coord C1 exon
chr18:52558912-52559004
Coord A exon
chr18:52552155-52558911
Coord C2 exon
chr18:52550188-52552154
Length
6757 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
CCTTATTCTTTCCCTTTCAGGAG
3' ss Score
12.05
Exon sequences
Seq C1 exon
GGCACCAGTCCTCCAAGCCAGACATGATATCTGAGTTGGAGAGAGAGGAGTTCTGGATGACAGAGATCCAGCCCCAGAGAGGAGGGTGTTCAG
Seq A exon
GTGAGAACAGCGCGGTCGGGCCGTTCCCCGGCGTCTGTCTGGAGCATCTGTGTCTTCTCCATGCGGCAGCCAGAGCGGCCCTTTGAAGAGCTCAGTCACCGCACAGTCTGGCGCTCCGGTCCTCCCGCACCGCCCCCAGCATCCACTCCACTAGGAAAAGGCCGCTGTGTTTAAGGGCCCCCTCGCCCAGCCGTGCCGTCCTGCACTTCCCTCCTGTCACATCCCCTCCCATGTCCTCTGTTCTCACATCCGAGGTTTGTGTTTGTACACGAGGATCGTTTCCTCTTTTTCCTCTGGCCGGAAGGCTGCTAGCCCACAGACCTCCGACCCCTTATCCTCTGCTCAGAAGGTGTCTCACCCACGGCCTTCCCTGGCCGCTCCTTTTACTCTTAATTCATGTTTGTTTGATTTTTTGGCTGCGCTGTGCAGCATGTGGGGATGGAACCCGAGCTCCCTGCAGTGGAAGCAGAGGGTCTTAACCACTGGACCACCAGCAGAGTCCCTGGATTCTGTATGAGTTTTCAGATGAATTTTCCTATTTCTGTGTTGGGATTTTGACAAGCATAGCGTTGAATCTGTAGATCCCTCTGGGTAGCACTGGTGAAGCAGTATTAAATCTCCCCATCTGTGGACCAGCGTTTTGTAGCTTTCAGTGTACAAGCCTTTCACCTCCTTGGTTCATTCCTAAGTATTTTATTCTTTTTGACGGTATTATAAATGGAATTTTTTTCTTTGTTTTCAAATTGTTCATTGAGGATAGAAATGCAACTAATTTGGGTTTTTTTTAATTGCAGTATAGTTGAGTCACAATGTTGATTTTCTGTTGTAAACAAAGTGATTGAGATATACATGCACACATTCTTTTCTACATAATTCTTTTCCATTTTGGTTTATCACAGGATATTAAATACAGTTCCCTGTGCTATATAGTAGGACCTTGTTTATCCATGCTGTATATAAAAGCTTTATCTCCTGACCCTGGACTCTCAGTTCATCCCTCCGTCCCCCCATGTCCCTTCACAGCCGCCACTCTGTCCTCTATGTCCATGTTTCTGGTTCATAGATAAGTGCATTTGTGTCGGATTTCAGATGTCCACATAAATGACATCGTGTGGTATTTGTCTTTCTCTTACTTCACTTAGTGTGATAATCTCGTTGCAGCCACGTTGCTGCAAGTGGCATTACTTCGTTCTTTTTACGGCTGATCAGTATTCTATTCTGTGTACGTGCTCACCCCACATCTCCTTCATCCGTTCATCTGTCGATGGCTGTGTGCTGCTGTAAATACAGGGGTGCCTGTATCTTTTTGAATTTTCGTTTTGGCTGAATATATGCCCAGGAGTGGGGTTGCTGACACACATGGTAATTCCATTTTCAGTTTTCTGAGAAACCTCCCTACTGTTTTCTACAGTGGCTAGAAATGCAACCGAATCTTTGTATGTTAACATTATACCCTGCTGCTTTGCTGAATTCACTTACTGGTTTTAGCAGTTTTTTTCTGTGTGGAGTCCATATTCCCAGCCAGGCAGGCAGTCACCTCACCCTCTCTGCCCCTCTCTGGTGCTTAAACAATCACTTGGCCTCAGTGACGTTTTCTACATTTCAAACGTGACATTTATAGAAGTCACAGATCTTGCAGCTGGGTCGACGAGGCGGCTCTGTGTAGGAACAGAGAAGAAGTTACAGAAATGAACCTTCTGCCATTCTAAGTTTAATTTGCATACTTTGGTTTTACTCTTAATTTGTCCTTAGTATTATAAGCACCACCTTGTGGATTCCCCGTGGACCAGTAGTGAGGCCTGCGTGCTTTCACTGCCAAGGGCCGGGTTCATTCCCGTGCGTGATGATTGAGGAGGAAAAAGATCTGTACCCTGAAAACTAGTCCCTGTTAGCGTTTCCATGGACCCCTAAGCTGCCTGTTTGCCATCTCCTGGCAAGTGCAGCATCTACTGCAGAAGTGGAAGAATCTCATACAGAAAATCAGTTAATTCCAAACGTGTGAATGTGATTAAGATAATCATATACAAAAGCACCAACCTGAGGTATACATGCTAAAAATGAGTTCAGTTTTAACACCCATCTTTTTTTTTTTAAACTCCACCAGAGAATTTCCATCATCATGTCTTCTGTTTGATTTCTTTCATCAATATCTTACAGTTTTCAGAGTACAGATCTTTTTCCTCTGATGCAGTGGTAAATGGGATTTCCCCCTTAATTTCTCTTTCCAATCTTTTGTTGTTAGTGTAGTAGGAATGCAAGAGATTTGTTGTATTAATTTTGTCTCCTGCAGCTTTGCCGAATTCATTGACGAACTCTAGTAGTTTTCTGGTAGCATCTTTAGGATTTTCTGCGTATAGCATGGAGCCATCTTAAGCCGGGTGGCCTCCTCAGTGGTCTTCTGTGCCTGCGTCTCAGCTTCTCTGAAAGTGTTCACCCAGGTGCAGCAAGTGCTGCTGGCCACAGCGCAGATACCGCCTCACTCAGCGGGAAGATAATCGAGGGCCATCCTGTCAGGCAGGCTTCTCAGGTGGCTCAGTGGTAAAGAATCTGCCTGCTAAGCAGGAGATGCGGGTTCAATTCTTGGGTTGGGAAGATCCCCTGGAAGAGGAAATGGCAACCCACTCCAGTATTCTTGCCTGGGAAATCCCATGGACAGAGGAGCCTAGTGGGCTACAGTCCATGGGGTTGCAAAGAGTCGGACACGATTAAGCAACTAAACAACAATCCTATTAGCAGCAGCCTCGACCAGAAGGTCCACATATTTCTTTAGGCAGCTAGTGTCATAGCAACGGAATCTGCAGTCTCTTCAAGAATTAAGGTTTCTGATCACAGCCTCACTTACATCTACTCTTAATCAGGGAAGTAGGGCCCTGCCAAAGGAAGCGGATCCTGAATCAGGAAAAGCCTCCCGGTAGGCCCTTTCTAGAGCAGGTAGGGGGCATGGTTATGTAACTGACCAGCATTACCCAGCTGTGTGCCACCATTGAGGCATCCACAGGCCCGAGGAGAAGCATAGTCACCCCAGAGAAAGAGGAGCCTTGTCAGGGCACAAACCACTTCTGTGAAGACGGCCCATTAGTGGATTCATTTGTAAGAACCGTTATCTGTTTGTTATCATTCAAACCAGGGGTCTGTTAACTTTTATATAAGGCTAGGACAAAATCTAAATTCCAGGCATTACCCCCTTAGCTGTGGCCTGGGGGATGCAAGTGATGGTATAATCTCCCCAGGTCAACGCCCGAGTAAAGAACAGGATTCACGCTTAGTTAAAGCCTGGATCCGGCACCTTGGGCTGAGGCAGTTGTCTACCCTGGTGTCAGCTGCCTCTCGCCTGTGTCACTGTGGTCGGGAGGTCCCCAGCGTACCTTCTAGTTTCCCCGAAGGGGCAGTGGATAAGCACACTTGGTGAGGCCCTTTCTGAAGGGGCATGAGGGCTGCTTTTCTTCTTCCTGATTCCAAATCAGAAGGGGGGAGAAAATTGGAAGTGTTAATTTGAATCAGAGTTAGATATTTGAGGAAACCAGAAAAGTTCAGGATCCAGGCCAGTTTACACATATGTGAAAAAAGCTCCAAGACAATTAGCAGGAGTAGAATTTAATAGCCACAAAGGTAAAACCATTTTTTTTTCTTTATAATTACTCCCCCACCCTTTTTTCTTTAACCAAAGATGATTGCAGTAAAGCTCATTTGTTTGTGTTAAACTTGGCCTGATTGTTTATATAAGCACAGCAGGAAAGGTGACTGATCACATTAAATCTTTTCTAAGATTGCTTTCCTGGAGGCCTGAAAGCCAGGTACCAGCTCAGTTGCTCCAGGCAGTTCCTTGAAGCTGTGTGGGCACGTCCAAATCTACCCGTCTCTCAAATACGATATTCCAGTCAAGCCTGGGTAAATGATGGTGTTTCAATTTGTGTCCTGTCACCAGGAGAACAGATTCTTACTGAATTTATGTGAACAGATACACTGTCTGGAAAATAAGGATAGTCACTGAGACTTCCTGAATTCTATAAGGATCAGTTAAGGATACAAAATAGATGTCTTGGGGCTAGATGTCCAATGGCTAAGACTCTGCTGTCCATGCAGGGGGCCCGAGTTCAATCCCTGATCAGGGAACTAGATCCCACATGCTGCAAGTAAGAGCTCATATGCTGCAAAGAAGACCTGGTGAAACCAAAGAAATAAGTAAAAAAATTTTTTTTTAAAGTAGATGTCTCATTTTTGCTAACAAAAGTATATTTTACCAGATTGCTGTTAAGTCATAGGTAACCTAAGAGAAAAAGGTCTCTCTAAATCTGGAAAGACAAAAAACATTAGAGCATCCTCCCCAGCCTCTGTTGTCCCATAATTAACACTTAATTCTGCTTGAATTTGTTTTTCCCATTAAATTCTTTCAACGTTGCCTGATGATTGAGGTCAACAGGGCAGCAATCCTTCCAAGAAGTTCGTAGGGTTTTCATGTGATTTGCCCGGTTGATGTGGGTGCCTGTATCATTAGAAACTGGAATGTGCACCCCAAGCAGGAAACTCAGTCTCTAACAGTTTCTTTGCCGCCATGAGGGCTCTGGTCTTGTGGCCGGGAAAGGCTTTACCACCTGGAAGACATCCTGCCTAGTGACCCACAGTGAGGGGCCCTTGAATGAATCCCTGCTGCTGCCGAGTAGTCAGAGGATCCACAAAGAGCAGGTCTGAGGCCTCTAGGGACAAAGAGTTTTTGTCCTCCCTAGAGGCCTGTTTTACTTTTTCTTTTAAATTTTTTTAAATTGAGGTAATTAACATTAATTTCAGGTGCACAACATAATAAATCAACATTTGTATACGTGACAAAATGACTGAGTCTAGTTAACATCCATCACCACATGGAATTTTTTTTTCTTGTGATGAAAACTTTTAAGGTCTCCTATCTTAAGGTCTCCTCTCAGCGACTTTGAAATATGCAGTACAGTATTATAACTGTAGTCACCAGGCTGTACAGAGAGTTTTGACTTACGGGTTTTTCTTAAAACGCACTGTGGTGAGTGAAGGAATGCAGACACCAACAGTGGGGTTTTCCAGGGAGCTGGAAAGATCAAGCAGCCACCTGGGGTTTTTCCTGGAGCCCTGACTATCCCTTGAATTTACAGCCATTGTTCGCGCATCTCAGTCTGATTCAGGAGCTGGGTGTTGCCAGGTGACAAGGATGTCAGGGTGACAGAAGTCTGGCATTGAGGGGTCGCTCTCTACAAAAGCAGAGTGCACTTCATCCACACACACCACACTAAACAGATGCTGCTGCTGCCTTCGTGTAAAGGTCAGCAAGGGCGCTTCCCTGAGACTCGGGTGCAGTCCTTTCTGTCTCAGCCTCAGTTTTGATGACAGACAATGTTTATAACATTTCAAGCCAGGACACACAATTTCAGGAACACTTGCAACATGTACCACCAGTCCCCAGAAATGGCGAGAAAGACAGTGAACTCAGAATGGCTCTCCCGACGCCGTGCTTGTGTTTCTTCTTGACCCAGAACACCCTCAGAAGTTCTGCTTGGGGATCTTGTTGCTGCTACTGATCTGATACGAGACAGAATTCAACGGAGTAAATGTGAAGATCTAAATGGACTTATTCATCAATTCATGAAGCATCCTGGGCTTGTTATGAATAATAAGACACCCATTTCACCCTTAGGGCTCTGAAGCCATTTCAGGAACAGAGACCAAAATATTAGAACAAAGTAAAAAACCAAGTATTGGAACAAAAGACACTCCCATTTTCTTTCCCCTTAGGAGCCGTGAGCCAGGAACAAAAGACACTCCCATTTTCTTTCCCCTTAGGAGCCGTGAGCCAGGAACCACGGAAGACAATGAAACACCTGTTACAAATCACCACTCACCTATAGCATATAGTGTATAGGAATTGTATGTCGCTTTTTCAGAAGTGGTTTTTTTTGATGCTATATAAATGGAGTTAATTCCACTTTCCAATTACTTCTATTACATCTGAATATATTTTTGTATAATTTTATTTTCTTGTGCAGCAAAAGTTTAAAGTGAAAACAGAGAAAACTTCTGACACAGACCTCAGAAGGGAGCAGAAAGAGTGCCCCAGATTTTTGTACCATCTTGTAGCTTGTGACGTTCCTCTATTCACCTATTCTAAACGCATTTTTGTATATTCCTAAAGACTTTTCTTTATGTAGATTCATAACCTTTGCAAATATATTCTTTGCTTTCCTTCCCAATCTGTATGCCTCTTGCTTCCTTCTGTGTGAATGCGGGTAGAGATTATAGGGGAGTCTGCGTCCACACAATATGGTTACTGAAACAGTATATTAACAATCACTTGTTGGGGGCGGGTTCTCCTCTGTTTTATTCATCTTTGTCCTCTTCTCATTCTTTTGGGTAAATCACGTGTGTTGGTGTCACGCTTCCGTGTCTGTCTTGGCTTCTAGCGGCTGTTTTTCAGTCCAGACCCTCCGTCTCTTCCTTGTCTGCATCCACCAAGGATATGGGCACATCTCACTCTCAACTGATCCCAAATAGCACTTTTTAAAAATTATTTAATTTTTTTCTACTCCCCTGCCATACTTTTTTAAATGTGGCTTTTTCTTCATTGATGTTCTCTTGGTTTCTGTAGGCCTTTGTTTTTCGGAACTCTGATGAAGGCATTTTCCCTAGTCGCTTACTGAATGTTTCCATGGCGGGAGCAACGGCTTGGTGCTGCCTGGCCCACCGTCTTGGTGATGCCATGCTCTCCTTCCTTAATTCCTTATTCTTTCCCTTTCAG
Seq C2 exon
GAGGCGGGAATCACGAGATGGCAACTGTTCAGGACACAGGAGTGAGGTGCCTTTCACGGGTAGAGCTTTCATGCTGGCAAATCAGGAGACACGTTGTGAGCAAATCAACTAAAAGCCAAGACTCTGTGATAAATACTCAAAAGAAGAGTTCTCAGTCCCCCAAACAACATAATTCCCCTGCAGGAGTGTCCGCTCAGGCTTCCATGGAAGGCAGCTGTTTTGTGACTCTTATAGAGGATCATTCTGATATTATTGAAAATCAAGCATTTCCAGCTGGGAGAGCTCTGAATTCCTGGAGTAAACTCTGTCTGAGCGAGACCCAGAATTACCAGAGGGGTTGTCAGCTGACTTCCATGAAGAACAAGATCTGTATGTTTGCTCCATGTGTTGACTTTTTCCCACGTATCTCCCCCCACCATGACGACCACACAGTGCCCCAAAGAGAGAAGGCTCAGGGCACGAGAGAGTGTGGCAAAGACCTCCTCAAGGCATCACCACTAGCCCAGCGAAGCATCGTTGAGGCTGGACCGAAAGCCTACCCGAGCAATGAGGGTGAGAGAGGACTCGGTGACCGCACCAGCCTGGAGCTTCATCAGCGGCTACACTTGGGCGGGAAGTCCCCGACCCACAGGACGCCCAAGAAGGACCCAGCTCACGGCTCAGCACGCCCCACTCCGCCGGGCGCCCTCCCGGGGACGAAGCGCTACTGGTGCCGTGAGTGCGGGAAGGGCTTCAGCCAGAGCTCCAACCTGCAGACCCACCAGCGCGTCCACACCGGGGAGAAGCCCTACTCGTGCCACGAGTGCGGGAAGAGCTTCAACCAGACCTCGCACCTGTACGCCCACCTGCCCATCCACACCGGGGAGAAGCCCTACCGCTGCGAGAGCTGCGGCAAGGGCTTCAGCCGGAGCACCGACCTCAACATCCACTGCAGGGTCCACACCGGCGAGAAGCCCTACAAGTGCGAGGCGTGCGGCAAGGGCTTCACGCAGAGGTCCCACCTGCAGGCGCACGAGCGGATCCACACCGGCGAGAAGCCCTACAGGTGCGCGGACTGCGGGAAGCGCTTCAGCTGCAGCTCCAACCTTCACACGCACCAGCGGGTGCACACGGAGGAGAAGCCCTACAAGTGCGAGGAGTGCGGCAAGCGCTTCAGCCTGAGCTTCAACCTGCACAGTCACCGGCGCGTGCACACGGGCGAGAAGCCCTACAAGTGCCAGGAGTGCGGCAAGGGCTTCAGCTCCGCCTCCAGCTTCCAGAGCCACCAGCGGGTGCACACGGGCGAGAAGCCCTTCCGCTGCAGCGAGTGCGGGAAGGGCTTCAGCCAGAGCTCCTACTTCCAGGCCCACCAGCGCGTGCACACCGGGGAGAAGCCCTACAAGTGCGAGGTGTGCGGCAAGCGCTTCAACTGGAGCCTGAACCTCCACAACCACCAGCGCGTGCACACGGGCGAGAAGCCCTACAAGTGCGAGGAGTGCGGCAAGGGCTTCAGCCAGGCCTCCAACCTCCAGGCCCACCAGAGCGTCCACACCGGGGAGAAGCCGTTCAAGTGCGCCGCGTGCCAGAAGCGGTTCAGCCAGGCCTCGCACCTGCAGGCACATCAGAGAGTCCACACCGGGGAGAAGCCCTTTAAGTGCGGTACCTGCGGCAAGGCCTTCAGCCAGAGGTCGAACCTTCAAGTCCATCAGATAATTCACACGGGCGAGAAGCCCTTCAAGTGCGAGGAGTGCGGGAAGGAGTTCAGCTGGAGCGCGGGGCTCAGCGCCCACCAGCGGGTGCACACGGGAGAGAAACCCTACACTTGCCAGCAGTGTGGCAAGGGCTTCAGCCAGGCCTCGCACTTCCACACCCACCAGAGGGTCCACACGGGGGAGAGGCCCTACATATGTGACATATGTTGTAAGGGCTTCAGCCAGAGATCACATCTTGTTTACCACCAGAGGGTCCACGCAGGAGGGAATCTATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007714:ENSBTAT00000010143:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.406 A=NA C2=0.224
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF079757=C1_4=WD(100=8.1),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=3.8),PF134511=zf-trcl=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=3.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development